PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_6470V3.4.p | ||||||||
Common Name | PpVNS1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 373aa MW: 42287.9 Da PI: 6.7627 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.6 | 7.4e-51 | 8 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 p+GfrFhPtdeelv +yL+ kv + + + i+e+d+yk+ePwdL+ + +++++wyfFs++dkky+tg+r+nrat++g+Wkatg+ Pp3c13_6470V3.4.p 8 PVGFRFHPTDEELVGYYLHGKVGRFQRDQ--LIQELDLYKIEPWDLHVcrigdDAPEHQSDWYFFSHKDKKYPTGNRANRATTAGFWKATGR 97 89********************9887544..8**************84445554444777******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl Pp3c13_6470V3.4.p 98 DKPIHT-QRQVIGMRKTLVFYKGRAPNGQKTDWIMHEFRL 136 ******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-53 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.751 | 7 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-27 | 8 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MNNKAPIPVG FRFHPTDEEL VGYYLHGKVG RFQRDQLIQE LDLYKIEPWD LHVCRIGDDA 60 PEHQSDWYFF SHKDKKYPTG NRANRATTAG FWKATGRDKP IHTQRQVIGM RKTLVFYKGR 120 APNGQKTDWI MHEFRLDDCP GASPNYESDG WVVCRVFRKM KNFKTKSQET SCSLEEDQVL 180 LPELMSHSEG GGGPSSQGGE VQYNPHLHHF SFTCKQELSV EDYRTPISSD PFMENLHLHE 240 LHRSIEPSCH QNYLPPSVSS TFRSLQPACT SGRSSRDYAE YSLVPFPLES TSLRDFDDAR 300 SSVTQDGSSL TALAHHNDAE YWMLDGGISK AGARRDQTLA AVTYHVDLKS RQSSDNSSAS 360 TNHEGFGHLW NV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-45 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-45 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-45 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-45 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-45 | 7 | 159 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-45 | 7 | 159 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14709 | 0.0 | protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898081 | 0.0 | AB898081.1 Physcomitrella patens PpVNS1 mRNA for NAC transcription factor PpVNS1, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392098.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Refseq | XP_024392099.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Refseq | XP_024392101.1 | 0.0 | NAC domain-containing protein 76-like | ||||
TrEMBL | X5II81 | 0.0 | X5II81_PHYPA; NAC transcription factor PpVNS1 | ||||
STRING | PP1S182_37V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 9e-72 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_6470V3.4.p |
Publications ? help Back to Top | |||
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