PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_6470V3.4.p
Common NamePpVNS1
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 373aa    MW: 42287.9 Da    PI: 6.7627
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_6470V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67.4e-5181362128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                        p+GfrFhPtdeelv +yL+ kv + + +    i+e+d+yk+ePwdL+       + +++++wyfFs++dkky+tg+r+nrat++g+Wkatg+
  Pp3c13_6470V3.4.p   8 PVGFRFHPTDEELVGYYLHGKVGRFQRDQ--LIQELDLYKIEPWDLHVcrigdDAPEHQSDWYFFSHKDKKYPTGNRANRATTAGFWKATGR 97 
                        89********************9887544..8**************84445554444777******************************** PP

                NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl
  Pp3c13_6470V3.4.p  98 DKPIHT-QRQVIGMRKTLVFYKGRAPNGQKTDWIMHEFRL 136
                        ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-535159IPR003441NAC domain
PROSITE profilePS5100553.7517159IPR003441NAC domain
PfamPF023657.3E-278136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNNKAPIPVG FRFHPTDEEL VGYYLHGKVG RFQRDQLIQE LDLYKIEPWD LHVCRIGDDA  60
PEHQSDWYFF SHKDKKYPTG NRANRATTAG FWKATGRDKP IHTQRQVIGM RKTLVFYKGR  120
APNGQKTDWI MHEFRLDDCP GASPNYESDG WVVCRVFRKM KNFKTKSQET SCSLEEDQVL  180
LPELMSHSEG GGGPSSQGGE VQYNPHLHHF SFTCKQELSV EDYRTPISSD PFMENLHLHE  240
LHRSIEPSCH QNYLPPSVSS TFRSLQPACT SGRSSRDYAE YSLVPFPLES TSLRDFDDAR  300
SSVTQDGSSL TALAHHNDAE YWMLDGGISK AGARRDQTLA AVTYHVDLKS RQSSDNSSAS  360
TNHEGFGHLW NV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-45715917165NO APICAL MERISTEM PROTEIN
1ut4_B6e-45715917165NO APICAL MERISTEM PROTEIN
1ut7_A6e-45715917165NO APICAL MERISTEM PROTEIN
1ut7_B6e-45715917165NO APICAL MERISTEM PROTEIN
3swm_A6e-45715920168NAC domain-containing protein 19
3swm_B6e-45715920168NAC domain-containing protein 19
3swm_C6e-45715920168NAC domain-containing protein 19
3swm_D6e-45715920168NAC domain-containing protein 19
3swp_A6e-45715920168NAC domain-containing protein 19
3swp_B6e-45715920168NAC domain-containing protein 19
3swp_C6e-45715920168NAC domain-containing protein 19
3swp_D6e-45715920168NAC domain-containing protein 19
4dul_A6e-45715917165NAC domain-containing protein 19
4dul_B6e-45715917165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.147090.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980810.0AB898081.1 Physcomitrella patens PpVNS1 mRNA for NAC transcription factor PpVNS1, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392098.10.0NAC domain-containing protein 76-like
RefseqXP_024392099.10.0NAC domain-containing protein 76-like
RefseqXP_024392101.10.0NAC domain-containing protein 76-like
TrEMBLX5II810.0X5II81_PHYPA; NAC transcription factor PpVNS1
STRINGPP1S182_37V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.19e-72NAC 007
Publications ? help Back to Top
  1. Xu B, et al.
    Contribution of NAC transcription factors to plant adaptation to land.
    Science, 2014. 343(6178): p. 1505-8
    [PMID:24652936]