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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pp3c13_6470V3.4.p |
| Common Name | PpVNS1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
NAC |
| Protein Properties |
Length: 373aa MW: 42287.9 Da PI: 6.7627 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c13_6470V3.4.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 163.6 | 7.4e-51 | 8 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
p+GfrFhPtdeelv +yL+ kv + + + i+e+d+yk+ePwdL+ + +++++wyfFs++dkky+tg+r+nrat++g+Wkatg+
Pp3c13_6470V3.4.p 8 PVGFRFHPTDEELVGYYLHGKVGRFQRDQ--LIQELDLYKIEPWDLHVcrigdDAPEHQSDWYFFSHKDKKYPTGNRANRATTAGFWKATGR 97
89********************9887544..8**************84445554444777******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl
Pp3c13_6470V3.4.p 98 DKPIHT-QRQVIGMRKTLVFYKGRAPNGQKTDWIMHEFRL 136
******.999****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MNNKAPIPVG FRFHPTDEEL VGYYLHGKVG RFQRDQLIQE LDLYKIEPWD LHVCRIGDDA 60
PEHQSDWYFF SHKDKKYPTG NRANRATTAG FWKATGRDKP IHTQRQVIGM RKTLVFYKGR 120
APNGQKTDWI MHEFRLDDCP GASPNYESDG WVVCRVFRKM KNFKTKSQET SCSLEEDQVL 180
LPELMSHSEG GGGPSSQGGE VQYNPHLHHF SFTCKQELSV EDYRTPISSD PFMENLHLHE 240
LHRSIEPSCH QNYLPPSVSS TFRSLQPACT SGRSSRDYAE YSLVPFPLES TSLRDFDDAR 300
SSVTQDGSSL TALAHHNDAE YWMLDGGISK AGARRDQTLA AVTYHVDLKS RQSSDNSSAS 360
TNHEGFGHLW NV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-45 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-45 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-45 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-45 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 6e-45 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 6e-45 | 7 | 159 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 6e-45 | 7 | 159 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB898081 | 0.0 | AB898081.1 Physcomitrella patens PpVNS1 mRNA for NAC transcription factor PpVNS1, complete cds, ecotype: Gransden 2004. |
