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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pp3c13_4720V3.6.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family | ARF | ||||||||
| Protein Properties | Length: 805aa MW: 89253.9 Da PI: 6.7967 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 78.2 | 8.5e-25 | 133 | 234 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+lt sd++++g +++p++ ae+ +++ ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD+v+F
Pp3c13_4720V3.6.p 133 FCKTLTASDTSTHGGFSIPRRAAEKVfppldftR-VPPA-QELVARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDSVLFI-- 220
99*****************************954.4444.38************************************************.. PP
SSSEE..EEEEE-S CS
B3 86 grsefelvvkvfrk 99
++++++l+++++r+
Pp3c13_4720V3.6.p 221 RDDKGNLLLGIRRA 234
5689999****997 PP
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| 2 | Auxin_resp | 115.4 | 5.1e-38 | 259 | 342 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+haa+t+s F+++YnPr+s+seFv+++ k++kal+ ++++vGmRf+m fete+ss rr+ Gt++g+ dldp+rWp+S+WrsLk
Pp3c13_4720V3.6.p 259 ASHAAATSSRFKIFYNPRQSPSEFVIPLTKYHKALYnTQFTVGMRFRMVFETEESSVRRYVGTITGLGDLDPIRWPKSHWRSLK 342
789*******************************9879********************************************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 6.67E-48 | 121 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.8E-41 | 127 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.79E-23 | 132 | 233 | No hit | No description |
| Pfam | PF02362 | 6.0E-23 | 133 | 234 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.126 | 133 | 235 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 4.3E-25 | 133 | 235 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.5E-33 | 259 | 342 | IPR010525 | Auxin response factor |
| PROSITE profile | PS51745 | 24.328 | 674 | 758 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 9.81E-7 | 688 | 753 | No hit | No description |
| Pfam | PF02309 | 5.9E-5 | 721 | 762 | IPR033389 | AUX/IAA domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 805 aa Download sequence Send to blast |
MYSSSPARLS ASGYGPATMD PGERRSLNSE LWHACAGPLV SLPPVGSRVV YFPQGHIEQV 60 AASTQKDADA HIPNYPSLPS KIICLLDNVT LHADPETDEV YAQMILLPIQ ISEKEALLSP 120 DLEVVNKQPT EYFCKTLTAS DTSTHGGFSI PRRAAEKVFP PLDFTRVPPA QELVARDLHD 180 QEWHFRHIYR GQPRRHLLTT GWSVFVSAKR LQAGDSVLFI RDDKGNLLLG IRRANRQQTV 240 MPSSVLSSDS MHFGVLAAAS HAAATSSRFK IFYNPRQSPS EFVIPLTKYH KALYNTQFTV 300 GMRFRMVFET EESSVRRYVG TITGLGDLDP IRWPKSHWRS LKVGWDESTA GERQHRVSLW 360 EIEPLTTPFL LCPPPLALRS KRPRGMPGED DLEMLMKKSH MWPNDSDPLG LQKFGGLAMN 420 TSWMRLPQQN VGSMVPSSQN EQYRALAAAA LQEIRTADSS KQLLAQSPLL SQLHFRQHQS 480 HPQPQQLMQH INDVPGPQLQ MSTCQTQTTD LGNPARSSSY RESDVQLGPP ATTSNSFSYQ 540 EMMGRAPSSN PLTSNGGHQL TSMMRTSQNG LQPCGTMQEF IQGSTPWFPN QPDSQSLILS 600 QHTRVEAPSG GVPGSFALPQ NNESALQGKN VLLSAYGPPA TPDSMGNGMM SGEVLDENGL 660 FQRNTGWPPA SSQRTFTKVH KLGSVGRSLD VRIFNTYAEL RKELAKMFHL DCLMEDPPTS 720 GWQIVFVDNE NDTLLLGDDP WEDFLNCVRS IKILSPSEVT QISQDQLKML ETVPVQHLQP 780 QRLISSDSGE VYPQSSLPDP SSGL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 1e-159 | 27 | 363 | 51 | 388 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. {ECO:0000269|PubMed:16107481}. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024392267.1 | 0.0 | auxin response factor 19-like isoform X2 | ||||
| Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
| TrEMBL | A0A2K1JKW6 | 0.0 | A0A2K1JKW6_PHYPA; Auxin response factor | ||||
| STRING | PP1S133_56V6.1 | 0.0 | (Physcomitrella patens) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G30330.1 | 0.0 | auxin response factor 6 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pp3c13_4720V3.6.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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