PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_21190V3.2.p | ||||||||
Common Name | PHYPADRAFT_161886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 712aa MW: 74345.9 Da PI: 5.9318 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.6e-38 | 269 | 328 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k +cprCds +tkfCyynny+ +qPr+fCk+C+ryWt+GG+lrnvPvG+grrk k+ Pp3c13_21190V3.2.p 269 PDKLAPCPRCDSLDTKFCYYNNYNANQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKTKHG 328 78899***************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.4E-31 | 271 | 327 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.407 | 273 | 327 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 275 | 311 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-23 | 277 | 326 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MGSSSHENGG DEPRVSKPAT VFLGDLSLSG EGPGFCGYSG PTHANTVNYD LGSHKEHYLH 60 QPQPEGEKGG LADRMNRNKV ILGQQPSLIS KDAEGQTTGL ELNASEVKTH LSCENPITND 120 VEDDDDGLSG AADKLQGDVA GVHEIVVTPF PLSSEKQESE TEPLDSIHLK SNSGDVVADG 180 SSLELANELQ NEVPGVSGLD QSAGTEALGP PQHQTAKLEE GTVGRRPLAV ADNEDTVGSV 240 RPPPVDGDLV GPSPKQAKVQ HQKPALKKPD KLAPCPRCDS LDTKFCYYNN YNANQPRHFC 300 KNCQRYWTAG GTLRNVPVGA GRRKTKHGNS HVRHGGLLDI PAARQDSDMA LSRPCLSRGA 360 SVPDQVSPLP ASSSSSPSTI TSLPSSQDRS SSDAVTQTCS MRPAEAVRKH HIPEPQVNVS 420 GDSGNRLLKA EHGGGCEPVL AGEAENCAEA CTSSLPGSPQ VDAALASQEV QSMLRGPPTT 480 LIPVCGGIVR PVGILDGSVW TAAPTPFGLF NGSWPYGYNV GWSGPAPGAP GAPTCPPGGT 540 LVSCQPAVAW SAPPNGLWSN VCWGSTLIPG MPAGLPGPSW MSPGWGAGWP MPWGPDAAAA 600 AAAAASASMQ VPAVPMSGNV SPVQSRLPIR PVLNKHPRDR PELERVESSL WVPKMVKIDD 660 AVNTPRSSVW TAVGAENRVE TVASGSNFKA FLPVGDNKVS ITSGDRKQVK S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4869 | 0.0 | gametophore| protonema| sporophyte |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB626699 | 0.0 | AB626699.1 Physcomitrella patens PpDof3 mRNA for Dof transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392472.1 | 0.0 | uncharacterized protein LOC112290457 isoform X1 | ||||
Refseq | XP_024392473.1 | 0.0 | uncharacterized protein LOC112290457 isoform X1 | ||||
Refseq | XP_024392474.1 | 0.0 | uncharacterized protein LOC112290457 isoform X1 | ||||
TrEMBL | A0A2K1JN53 | 0.0 | A0A2K1JN53_PHYPA; Uncharacterized protein | ||||
STRING | PP1S37_7V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 3e-30 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_21190V3.2.p |
Entrez Gene | 5922591 |
Publications ? help Back to Top | |||
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