PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_20650V3.5.p | ||||||||
Common Name | PpVNS5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 43260.2 Da PI: 6.6493 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.9 | 2.4e-50 | 8 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +p+GfrFhPtdeelv +yL +v+++k+el + i+++d+yk+ePwdL+ +++++++yfFs++dkky+tg+r+nrat++g+Wka Pp3c13_20650V3.5.p 8 VPVGFRFHPTDEELVGYYLPMRVTARKVEL-DLIRDLDLYKLEPWDLQDlckiqaDSNEKQTDYYFFSRKDKKYPTGNRANRATTQGFWKA 97 599************************999.99**************94465533222344577*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk++++k ++l+g++ktLvfy+grap+g+ktdW+mhe+rl Pp3c13_20650V3.5.p 98 TGRDKPIHTKLQTLIGMRKTLVFYQGRAPHGVKTDWIMHEFRL 140 *********9999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-53 | 6 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.931 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-25 | 9 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MNQLTAKVPV GFRFHPTDEE LVGYYLPMRV TARKVELDLI RDLDLYKLEP WDLQDLCKIQ 60 ADSNEKQTDY YFFSRKDKKY PTGNRANRAT TQGFWKATGR DKPIHTKLQT LIGMRKTLVF 120 YQGRAPHGVK TDWIMHEFRL DDGPGQPAHV NDGWVVCRVF KKNKNQKPKV EERAVSHEEH 180 MGTLPSEHMG SPDILSGGGR FAYSDQSQYG SIKQEIISLD EYKSRHSDMY LNQFSGQMAL 240 LSNAETQSRS MPSSSILNQS RSHTCLTLSP RRPDCYQNFN SYLETPAYPE NSTEYTDPQS 300 SGSGSDGETH EDSILGNLDN LDWSALLQEP SSGKDSRCPP TASAKANTED VTALIQIKRQ 360 NSDIFSSLDL WNYSHVAQQT L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-44 | 8 | 167 | 15 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898085 | 0.0 | AB898085.1 Physcomitrella patens PpVNS5 mRNA for NAC transcription factor PpVNS5, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392705.1 | 0.0 | NAC domain-containing protein 30-like | ||||
Refseq | XP_024392706.1 | 0.0 | NAC domain-containing protein 30-like | ||||
Refseq | XP_024392707.1 | 0.0 | NAC domain-containing protein 30-like | ||||
Refseq | XP_024392708.1 | 0.0 | NAC domain-containing protein 30-like | ||||
TrEMBL | X5IYJ7 | 0.0 | X5IYJ7_PHYPA; NAC transcription factor PpVNS5 | ||||
STRING | PP1S223_12V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 4e-73 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_20650V3.5.p |
Publications ? help Back to Top | |||
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