PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_2000V3.4.p | ||||||||
Common Name | PpDof6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 646aa MW: 68314.9 Da PI: 7.6502 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.6 | 3.2e-39 | 211 | 269 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k ++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk+ Pp3c13_2000V3.4.p 211 PDKVVSCPRCDSLDTKFCYYNNYNINQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKH 269 78999****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 208 | 268 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-32 | 212 | 269 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.602 | 215 | 269 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 217 | 253 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MSSDNLSERR EGLLLPSANP KFCQGVGRWI LQDQAVSDFV YQRLPLGGEG VALDVVEQAS 60 MPHPCDWTLG VQPGCPKASV DPQIKLFGQT IGVVSSRADA GADAGVLKPT SASPPRGTAP 120 LSKQDGGDSV ILRDENEGGV VENLRTARSS SRDEFLQPLK SSELVSGSRS LNTGVSLGPS 180 DSEGAHSDEL KDQGEVDHSQ SVGDDKHLQK PDKVVSCPRC DSLDTKFCYY NNYNINQPRH 240 FCKNCQRYWT AGGTLRNVPV GAGRRKNKHG GMQRDCPEAS VNCSIQSDSG DSASQLLSCA 300 LGSPTSQKAG SSLKHAQPKR LAGQGSPMRS SGFGQDNGIS ISPPYSLHQN SRLPFQSFSL 360 SQGFMPSAVE ASTVGSSDSA SISLGQRLAR CPSGNGFDKD CSRSSLNGQT QDTHSLLSKQ 420 SAYNSSALQL EATSGMYRFV LPSSSSGWAG NGASVGFHSG EWPHGYHLEL GGKHPISHSS 480 QGVSYSTPDV RASLNAIQTL PPTSSWSPTL VQSGATQWGA DVGHVHNPPQ MAASVWPRSQ 540 SMVPSAASVG QAPVAAPTTL GKRGLLEEGS CEWPSKCLRT DDSKNLNTWA MPGKNSTEVM 600 NGGNALSLFR PKLELAVACE TKDSFMTRHL TTVAAARSGP FQVTI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1066 | 0.0 | gametophore| protonema |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB626701 | 0.0 | AB626701.1 Physcomitrella patens PpDof6 mRNA for Dof transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393058.1 | 0.0 | uncharacterized protein LOC112290699 | ||||
TrEMBL | H1ACT2 | 0.0 | H1ACT2_PHYPA; Dof transcription factor | ||||
STRING | PP1S385_53V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 2e-35 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_2000V3.4.p |
Publications ? help Back to Top | |||
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