PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pp3c13_19170V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 1121aa MW: 124880 Da PI: 5.1885

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c13_19170V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.1	3.5e-12	276	323	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 +grW+ eE+e l +av+++G+g+Wk I + + +R+ q+k++++ Pp3c13_19170V3.1.p 276 KGRWSSEEEEALRRAVNKFGSGSWKEIKENEPtlSNRSIFQLKDKYRV 323 79******************************9*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.726	271	329	IPR017930	Myb domain
SMART	SM00717	8.9E-8	275	327	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-11	276	322	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-10	276	323	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.26E-11	276	326	IPR009057	Homeodomain-like
CDD	cd11660	4.20E-15	278	325	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence Send to blast
MEVDMFSKLM LTEEERVVDP VLGYPHGYAK LCQHAAVQLQ GLVTPFTAGP PQRFLPYSPQ 60 AEDFATLKKW DGLFPTVDDT ERDPDLNARK HAEELWQQLD HLGNAGFDPA KFRVDSYGNV 120 VYWNADPSSP LAWEIDHWFP HSRGGKTVVS NLRVLQWQAS QRKKSRLEFL VPWWDLQHGC 180 SINQFLSAFA SKSADFRKRS FALFFSGGED ESIAREHVGE CRPWPQHFRE KKAYCGLAAA 240 AIVTVKKEGE KVQQSTSPLQ PLVVCDPPSA AGTEAKGRWS SEEEEALRRA VNKFGSGSWK 300 EIKENEPTLS NRSIFQLKDK YRVIRVDCEN PGKENVVNVF STSSRSTHSD RHSSATTTLQ 360 KELRVKIMRE EEKREKEHEI AELEETVMNL KQQNEKERLS AIQLEAVLTK HKRSVEKQRR 420 WAEAQSSHRL CLERMIRDTM HQSISYKEQA RLNQAACNAL MARLDCQKAG CKVAEQDLLR 480 SYSQRETLEA AVGDTDSKFN STIIAVKKDP MLGREIVNGS NCESTPGDGK DEDEEVDKKV 540 LLQCNDIIES DSGDETAIEI YRLRTEIRRA KDILHQNQQE TTQISLNREI DDVTNLEKDI 600 NEEAEVLAPK VPSEALPVCG TKDMVDVSAH EEKITNVEVA GPPMQLDGNR GGSSHGEFAD 660 DDVEYEHHYP EEERSYDNQP HHRLPEVDAG LDLGISQVRT LSAELIRAKC AIMNLDSLEI 720 CDHLECSVPE PSDLSDGANP ISCSRNEVQK NVIVVQSETS KSDVAANMIE TAVVCKQGYL 780 NELFHHVQLQ FPTSRAAGRY AKDDLSRKSE EHLDDVLQQV LDTHPDGIFQ ADSRKSQSSD 840 ADDEKLRKIG KQNLDKWLQV LLFNVESAGS SPGQVSPLHR AFSDPPFSQI SVAAMRGTLD 900 LETNQNQELS EKTRENVESS KGLWGGLLRK LSARQQSDQC LSNKLDAESD GEVDVAKSQG 960 IASSEIDNPS ALNALNTLSF STHVTSNNGD IQALDAQRCG GIANSKTNSV DTVSVVAAKK 1020 LEGVVPDHKS LDSEVLAGDT ALKGVELGVS GCKLDQHCST VKRYFPRPLS DVDEISETDS 1080 LNSNNYSDSR QSENKDPNKS SLRASIKAAG LAWKKAVKKL *

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence Send to blast

MEVDMFSKLM LTEEERVVDP VLGYPHGYAK LCQHAAVQLQ GLVTPFTAGP PQRFLPYSPQ  60
AEDFATLKKW DGLFPTVDDT ERDPDLNARK HAEELWQQLD HLGNAGFDPA KFRVDSYGNV  120
VYWNADPSSP LAWEIDHWFP HSRGGKTVVS NLRVLQWQAS QRKKSRLEFL VPWWDLQHGC  180
SINQFLSAFA SKSADFRKRS FALFFSGGED ESIAREHVGE CRPWPQHFRE KKAYCGLAAA  240
AIVTVKKEGE KVQQSTSPLQ PLVVCDPPSA AGTEAKGRWS SEEEEALRRA VNKFGSGSWK  300
EIKENEPTLS NRSIFQLKDK YRVIRVDCEN PGKENVVNVF STSSRSTHSD RHSSATTTLQ  360
KELRVKIMRE EEKREKEHEI AELEETVMNL KQQNEKERLS AIQLEAVLTK HKRSVEKQRR  420
WAEAQSSHRL CLERMIRDTM HQSISYKEQA RLNQAACNAL MARLDCQKAG CKVAEQDLLR  480
SYSQRETLEA AVGDTDSKFN STIIAVKKDP MLGREIVNGS NCESTPGDGK DEDEEVDKKV  540
LLQCNDIIES DSGDETAIEI YRLRTEIRRA KDILHQNQQE TTQISLNREI DDVTNLEKDI  600
NEEAEVLAPK VPSEALPVCG TKDMVDVSAH EEKITNVEVA GPPMQLDGNR GGSSHGEFAD  660
DDVEYEHHYP EEERSYDNQP HHRLPEVDAG LDLGISQVRT LSAELIRAKC AIMNLDSLEI  720
CDHLECSVPE PSDLSDGANP ISCSRNEVQK NVIVVQSETS KSDVAANMIE TAVVCKQGYL  780
NELFHHVQLQ FPTSRAAGRY AKDDLSRKSE EHLDDVLQQV LDTHPDGIFQ ADSRKSQSSD  840
ADDEKLRKIG KQNLDKWLQV LLFNVESAGS SPGQVSPLHR AFSDPPFSQI SVAAMRGTLD  900
LETNQNQELS EKTRENVESS KGLWGGLLRK LSARQQSDQC LSNKLDAESD GEVDVAKSQG  960
IASSEIDNPS ALNALNTLSF STHVTSNNGD IQALDAQRCG GIANSKTNSV DTVSVVAAKK  1020
LEGVVPDHKS LDSEVLAGDT ALKGVELGVS GCKLDQHCST VKRYFPRPLS DVDEISETDS  1080
LNSNNYSDSR QSENKDPNKS SLRASIKAAG LAWKKAVKKL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392370.1	0.0	uncharacterized protein LOC112290409
TrEMBL	A0A2K1JMF0	0.0	A0A2K1JMF0_PHYPA; Uncharacterized protein
STRING	PP1S305_38V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2877	2	7

Link Out ? help Back to Top
Phytozome	Pp3c13_19170V3.1.p