PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_15520V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 766aa MW: 82025 Da PI: 6.8806 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 375 | 434 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+ Pp3c13_15520V3.3.p 375 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVApGCPVRKQVQRCADDVSILITTYEGTHNHP 434 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-5 | 108 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.91 | 114 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 138 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:2.20.25.80 | 6.5E-33 | 360 | 434 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-28 | 368 | 435 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.438 | 370 | 436 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-38 | 375 | 435 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-27 | 376 | 434 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 766 aa Download sequence Send to blast |
MCSLNWSMGA PNSESDDKEA VGRFDNMVRA AISGETQRKI SSGRVDMVRK IDLSVKLDED 60 SVDDDEEMES SEPEEHDHTM SDHYMPSVKD EEVSSPQPRL QLGSQQYHHS GCTFKCEVEG 120 CGSVYGSRDE LLSHSLTHRG TSASDRSTVE DDTPPTSPAG LPASEPIQLQ SELREARLEI 180 KRLAEENEYF HSMLTHLTLE CHKLRMHIAA SAQRDTLGDP THSLVTQSET AAASPATHEN 240 LQRGYTEKNS KLHTASSPKS PPREQNLKKL GRARILYNES QKSEDMNVGT ASPSGSEMSS 300 LKSSPSRPSH AASPSQEADR MQEGAEDQTS WRLNKVQKIT HTDVPSGVPI TQVEADPNIR 360 KARVSVRARS DAPTMNDGCQ WRKYGQKMAK GNPCPRAYYR CTVAPGCPVR KQVQRCADDV 420 SILITTYEGT HNHPLAPAAA AMASTTSAAA CMLVSGSTSS DMNRMTTAPP FLQLAGSQGQ 480 NSTAVPMISA SAPYQTITLD LTNDSTAHLS PRLNKGSGVP LANYNQNFQG AATTSGVTVG 540 QSGGQQVMMP PQQPVIRASP MFLNNVMSYA PVVTNCAPLS SSGSAFSPAG TSGDHQAMQH 600 QHHPRTSRIY GDHQPQASTP THANSLLSAG VPQFLAESVT AATAAITSDP NFTYALAAAI 660 TSIISSQSSH DVHSKLTQIA ANQSREGNQQ RMSFPSSAFT AVAASRSKKP DGGRISPSRA 720 VPEEATLSSM LSSALMSVSN KDQPAATKCV KPSASHGSMA ISERQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 365 | 435 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 365 | 435 | 7 | 76 | Probable WRKY transcription factor 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ889620 | 6e-37 | DQ889620.1 Physcomitrella patens clone 4 WKRY transcription factor-like gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392883.1 | 0.0 | WRKY transcription factor 42-like | ||||
TrEMBL | A0A2K1JM36 | 0.0 | A0A2K1JM36_PHYPA; Uncharacterized protein | ||||
STRING | PP1S158_166V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 2e-49 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_15520V3.3.p |