PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_13320V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 548aa MW: 60296.8 Da PI: 5.969 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.1 | 3.3e-18 | 421 | 515 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 k+l+ps v+++gr+vlpkk ae+h ++ e++ l ++d sg+ W +++++ ++ks++y+l+ ++++Fvka++L+e+D++v+++ + Pp3c13_13320V3.6.p 421 AKQLSPSGVSSLGRIVLPKKEAEAHlpHLVASEGVFLPMTDfDSGQAWLFRYRFwsNNKSRMYLLE-NTRDFVKAHNLQERDMLVLYR--D 508 599************************9999999*******9999*******99755555556555.********************4..4 PP SEE..EE CS B3 88 sefelvv 94 e+++vv Pp3c13_13320V3.6.p 509 AEGSYVV 515 5555565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-24 | 416 | 513 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-21 | 419 | 515 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.1E-12 | 420 | 521 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.389 | 420 | 521 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-14 | 421 | 515 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.31E-22 | 422 | 516 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MIISRQHETF RSLDALRGVL KDAGWSDVLR LLSEMNIYME SFNVLCTEGP PYRIQGGMRD 60 IGLHLGNWRL GIHEDQSDDH LVNVDSGGES ETEKPSFFDD DDCPPSASVT TSEFSVTVGL 120 PRRFGNPLVS EEGLESQEAE VSRTPAGTDP SSECTMKTSI REISRKVAVN ESALCTAIDS 180 LGGGVKGLKA VVDFVKHFQE SGVPVAGDVN TDSFTRGLEQ FCLVNGQAKE GAVVPSLENM 240 SQDRGLSGTA ESETQQTGGV AADQNRLIVP NLPIRGQYEW TRNAPNGDIY TMGYMENMSG 300 YFPNFCYPYP PPFAGYGPFN LGVRPMFMPM MGVPYFTPPS LEYMHSSDAI TRASRKSRIA 360 KRRVHGNDQN QPRLTIKAAA VGGAPVQIGR QDNLGHQSVA APSAKQGKQG LSTDNLVFLL 420 AKQLSPSGVS SLGRIVLPKK EAEAHLPHLV ASEGVFLPMT DFDSGQAWLF RYRFWSNNKS 480 RMYLLENTRD FVKAHNLQER DMLVLYRDAE GSYVVRGEKV GAIQRDTTEE ITRTAEEHSQ 540 KRQKVQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 1e-28 | 418 | 519 | 3 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 1e-28 | 418 | 519 | 3 | 105 | B3 domain-containing transcription factor FUS3 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5794 | 0.0 | protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392855.1 | 0.0 | uncharacterized protein LOC112290619 isoform X2 | ||||
Refseq | XP_024392856.1 | 0.0 | uncharacterized protein LOC112290619 isoform X2 | ||||
Refseq | XP_024392857.1 | 0.0 | uncharacterized protein LOC112290619 isoform X2 | ||||
Refseq | XP_024392858.1 | 0.0 | uncharacterized protein LOC112290619 isoform X2 | ||||
Refseq | XP_024392859.1 | 0.0 | uncharacterized protein LOC112290619 isoform X2 | ||||
TrEMBL | A0A2K1JLR1 | 0.0 | A0A2K1JLR1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S5_75V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 9e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_13320V3.6.p |