PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_13320V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 548aa    MW: 60296.8 Da    PI: 5.969
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_13320V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.3e-18421515294
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          k+l+ps v+++gr+vlpkk ae+h   ++  e++ l ++d  sg+ W +++++  ++ks++y+l+ ++++Fvka++L+e+D++v+++  +
  Pp3c13_13320V3.5.p 421 AKQLSPSGVSSLGRIVLPKKEAEAHlpHLVASEGVFLPMTDfDSGQAWLFRYRFwsNNKSRMYLLE-NTRDFVKAHNLQERDMLVLYR--D 508
                         599************************9999999*******9999*******99755555556555.********************4..4 PP

                         SEE..EE CS
                  B3  88 sefelvv 94 
                          e+++vv
  Pp3c13_13320V3.5.p 509 AEGSYVV 515
                         5555565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-24416513IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-21419515IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.1E-12420521IPR003340B3 DNA binding domain
PROSITE profilePS508639.389420521IPR003340B3 DNA binding domain
PfamPF023622.6E-14421515IPR003340B3 DNA binding domain
CDDcd100172.31E-22422516No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MIISRQHETF RSLDALRGVL KDAGWSDVLR LLSEMNIYME SFNVLCTEGP PYRIQGGMRD  60
IGLHLGNWRL GIHEDQSDDH LVNVDSGGES ETEKPSFFDD DDCPPSASVT TSEFSVTVGL  120
PRRFGNPLVS EEGLESQEAE VSRTPAGTDP SSECTMKTSI REISRKVAVN ESALCTAIDS  180
LGGGVKGLKA VVDFVKHFQE SGVPVAGDVN TDSFTRGLEQ FCLVNGQAKE GAVVPSLENM  240
SQDRGLSGTA ESETQQTGGV AADQNRLIVP NLPIRGQYEW TRNAPNGDIY TMGYMENMSG  300
YFPNFCYPYP PPFAGYGPFN LGVRPMFMPM MGVPYFTPPS LEYMHSSDAI TRASRKSRIA  360
KRRVHGNDQN QPRLTIKAAA VGGAPVQIGR QDNLGHQSVA APSAKQGKQG LSTDNLVFLL  420
AKQLSPSGVS SLGRIVLPKK EAEAHLPHLV ASEGVFLPMT DFDSGQAWLF RYRFWSNNKS  480
RMYLLENTRD FVKAHNLQER DMLVLYRDAE GSYVVRGEKV GAIQRDTTEE ITRTAEEHSQ  540
KRQKVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-284185193105B3 domain-containing transcription factor FUS3
6j9b_D1e-284185193105B3 domain-containing transcription factor FUS3
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.57940.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392855.10.0uncharacterized protein LOC112290619 isoform X2
RefseqXP_024392856.10.0uncharacterized protein LOC112290619 isoform X2
RefseqXP_024392857.10.0uncharacterized protein LOC112290619 isoform X2
RefseqXP_024392858.10.0uncharacterized protein LOC112290619 isoform X2
RefseqXP_024392859.10.0uncharacterized protein LOC112290619 isoform X2
TrEMBLA0A2K1JLR10.0A0A2K1JLR1_PHYPA; Uncharacterized protein
STRINGPP1S5_75V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.19e-34B3 family protein