PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_11550V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 548aa    MW: 60991.4 Da    PI: 6.7018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_11550V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12342388455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ +I++Lq
  Pp3c13_11550V3.2.p 342 NHVQAERQRREKLNKRFYALRAVVPNV-----SKMDKASLLGDAIAHINYLQ 388
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-13139IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.45E-14336392No hitNo description
SuperFamilySSF474592.09E-17336404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-10342388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17342403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAGIQTILCV PTMNGVVELG STDLIHRRWD VVEHIKMVFQ DSTWGLDDMQ IMSHSQVANF  60
DSTLMPYNSS MTLDPTSIAG TTSITSNTDP GLADHESVDF NARLFHTDKL LLHSGGLGFN  120
GFDHLWGQTN DFHCNDPLPD DVENSLGQSM YDILGKLPLQ EEQLPFLASS SFPKNPESNS  180
RHSVFQMNNV GKLPQLDHRS ASLPAMEKPH SKLQPTYTFP QYSGDFEVGE MYNPPGHIPT  240
MRPKLPNQEE RVQFPLMPAV EKASVIEKPM PLLKPIPQSP SPPVSKPAGP SVSANGLKLT  300
DHLGQDFVDP ESVTIKVNVM EAPKLPRKRG RKPANDREEP LNHVQAERQR REKLNKRFYA  360
LRAVVPNVSK MDKASLLGDA IAHINYLQEK LHDAEMRIKD LQRVCSAKRE RGQEALVIGA  420
PKDDTQLKPE RNGTRPVFGI FPGGKRFSIA VNVFGEEAMI RVNCVRDAYS VVNMMMALQE  480
LRLDIQHSNT SSTSDDILHI VVAKMKPTER YTQEQLAALL ERSDQATGYL TKREGSDTAL  540
QKLGNPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-24337395361Transcription factor MYC2
5gnj_B4e-24337395361Transcription factor MYC2
5gnj_E4e-24337395361Transcription factor MYC2
5gnj_F4e-24337395361Transcription factor MYC2
5gnj_G4e-24337395361Transcription factor MYC2
5gnj_I4e-24337395361Transcription factor MYC2
5gnj_M4e-24337395361Transcription factor MYC2
5gnj_N4e-24337395361Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2170.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393060.10.0transcription factor MYC4-like
TrEMBLA0A2K1JM040.0A0A2K1JM04_PHYPA; Uncharacterized protein
STRINGPP1S5_289V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-43bHLH family protein