PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_10800V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 435aa MW: 48136.4 Da PI: 9.0073 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.3 | 1.2e-52 | 17 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv +yL++k+e+k + + vi+e+d+yk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Pp3c13_10800V3.3.p 17 LPPGFRFHPTDEELVLHYLCRKAESKVFAI-PVIAEIDLYKFDPWDLPGKAIFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKP 106 79*************************999.89***************7766799************************************ PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ + +++g+kk Lvfy+grapkg+kt+W+mheyrl Pp3c13_10800V3.3.p 107 IHTAvgGIRKIGVKKALVFYEGRAPKGVKTNWIMHEYRL 145 **99877788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-63 | 12 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.079 | 17 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 18 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MVIMSSPSGG PVAQLQLPPG FRFHPTDEEL VLHYLCRKAE SKVFAIPVIA EIDLYKFDPW 60 DLPGKAIFGE REWYFFSPRD RKYPNGARPN RAAASGYWKA TGTDKPIHTA VGGIRKIGVK 120 KALVFYEGRA PKGVKTNWIM HEYRLAEGVC ASVHAHRKGS LRLDDWVLCR IYKKSTNAQR 180 TGKERDSSSC VEEVLASLPE IDDPKLVLPR LGSFTGFPEP EDNHFMDSLL LGENKSVDAE 240 SSPEFKRSVL GLQRGMQPQP GTLGSHILSA FNSKFPFGWK MPRPVDGPFD SQQFDKFNRQ 300 LLELGPTSSQ RPTTLSLRQP APDSAMRQVE NVLMPLRPGT GAIPENRTIS DEEVQSTSRA 360 SSMGQFSGTS NNEGLESIFT FNYEQPRSTI NAMLPAPTTG PNTELRFSGS GMSASQPQYT 420 QSRAPNYSYN PSSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-81 | 11 | 180 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-81 | 11 | 180 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-81 | 11 | 180 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-81 | 11 | 180 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-81 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-81 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-81 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-81 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-81 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-81 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-81 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-81 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-81 | 11 | 180 | 11 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-81 | 11 | 180 | 11 | 171 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.18356 | 3e-48 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392980.1 | 0.0 | NAC transcription factor 47-like | ||||
Refseq | XP_024392981.1 | 0.0 | NAC transcription factor 47-like | ||||
TrEMBL | A0A2K1JLF2 | 0.0 | A0A2K1JLF2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S5_359V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 7e-90 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_10800V3.3.p |