PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_8190V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 436aa    MW: 48616.3 Da    PI: 5.4909
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_8190V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-08380429147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        + +WT eE e l++ v+++G+g+Wk I ++       Rt+ + k++w+++
  Pp3c12_8190V3.1.p 380 KRKWTDEEVETLKREVRKFGKGRWKFILERNLdvfHERTEVDMKDKWRNL 429
                        579**************************9999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-12375429IPR009057Homeodomain-like
PROSITE profilePS5129413.193375434IPR017930Myb domain
SuperFamilySSF466894.49E-13377430IPR009057Homeodomain-like
SMARTSM007172.7E-4379432IPR001005SANT/Myb domain
PfamPF002491.2E-6380429IPR001005SANT/Myb domain
CDDcd116603.21E-19381431No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MVSDTPEGRK LVRADTPEEK LLGVWIWEYV LKHTSDVSFI RELTESLLFP KDVARLKQMI  60
LIKELSFQVS KDLDVEKTLD ILEALCHACE GECLDKAGAE PENVVPSKRF KASSSGAPKV  120
RNNAGEEFVL QGILQPTFEL KEKLQKLLTS SVGEQVEAQN AKVKVIESEL SALIKSAWAG  180
FGPVFLEKTE AAVINGQYKP EGVSLLLPPA SAQNMLGTEG KNGSSPGNEE FPENARRVLD  240
ECGVELQKDV SGGNEDLRRA RQELANSCVE LQKVVKDPLP ALLRNRDGTT EASETVLGKT  300
DEPDIRRSLF EPHPSARGEG WDEEPGDLQG SPSQPTPSAS RRIQLPPIHS PERPNLLPQS  360
TMASALPLPN MSGIKPRRQK RKWTDEEVET LKREVRKFGK GRWKFILERN LDVFHERTEV  420
DMKDKWRNLE KYNGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.39830.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390657.10.0uncharacterized protein LOC112289582 isoform X2
TrEMBLA0A2K1JPW60.0A0A2K1JPW6_PHYPA; Uncharacterized protein
STRINGPP1S91_241V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.26e-12MYB_related family protein