PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_5931V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 300aa MW: 33404.4 Da PI: 8.1642 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.6 | 3.7e-42 | 46 | 146 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkCa+dC+lapyfp +qpk+f nvh+lFG+s +l++l+++++e+red+++s+vyeA+ r +dPv+G++gvi+ lq+q+++lk Pp3c12_5931V3.2.p 46 ACAACKYQRRKCATDCPLAPYFPPDQPKRFLNVHRLFGVSSILRILRQVDPEKREDTVKSIVYEADTREKDPVHGCLGVIRLLQNQVNKLKD 137 7******************************************************************************************* PP DUF260 93 elallkeel 101 e+++++e+l Pp3c12_5931V3.2.p 138 EVVVAREQL 146 ***999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.172 | 45 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-40 | 46 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MQRLKSLEDF SKMTAPPKIS PPGERSIVTG GAGPSSSGPS AGANAACAAC KYQRRKCATD 60 CPLAPYFPPD QPKRFLNVHR LFGVSSILRI LRQVDPEKRE DTVKSIVYEA DTREKDPVHG 120 CLGVIRLLQN QVNKLKDEVV VAREQLYLME QQHTSSILQQ NYGHQHAGGQ ADYHHYHLQP 180 QYRASTSHQG GSFHDPAHGQ NLTYQDSRSS HGAYSDHARY LVDSDSDLHG NSMLGQQIIK 240 DFNNALQQLR PSVFPNDLGI LDDWSRTFGG LALQSVHQLV QNFRMIQCSS NSFVSKFFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-36 | 40 | 146 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-36 | 40 | 146 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390324.1 | 0.0 | LOB domain-containing protein 6-like isoform X2 | ||||
TrEMBL | A0A2K1JPM2 | 0.0 | A0A2K1JPM2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S56_77V6.1 | 1e-145 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 2e-33 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_5931V3.2.p |