PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_5100V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 921aa MW: 96996.3 Da PI: 5.9038 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00089 | 374 | 398 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ C ksFs +s LkrH H Pp3c12_5100V3.6.p 374 YVCHydGCIKSFSERSKLKRHFLIH 398 99*******************8877 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.8e-05 | 406 | 428 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C Cgk Fs nL++H++tH Pp3c12_5100V3.6.p 406 CVyeGCGKAFSLDFNLRSHMKTH 428 66669*****************9 PP | |||||||
3 | zf-C2H2 | 11.7 | 0.00081 | 433 | 458 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+k++ + + L+ Hi + H Pp3c12_5100V3.6.p 433 HECPydGCDKRYCQEYKLRAHIVKeH 458 78********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.2 | 345 | 369 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.4E-6 | 345 | 369 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.408 | 345 | 369 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.71E-6 | 346 | 398 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 347 | 369 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.7E-13 | 372 | 396 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0065 | 374 | 398 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.815 | 374 | 403 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 376 | 398 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.83E-14 | 384 | 431 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-20 | 397 | 431 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.027 | 404 | 428 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.819 | 404 | 433 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 406 | 428 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 433 | 458 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.3E-5 | 435 | 454 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 435 | 458 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 921 aa Download sequence Send to blast |
MDRLDEASGG ADLAVQGENC LKQIASNYVE EEDGENCSGE EEGVGRENGA DSAAPGGHGG 60 GGRHGLGESV GVEVRDSAGH SGNESERREA SGESCDEEQG GGSSGEEEEE DGDDEEEGEE 120 GEQRHGGASV AENGFANLDE RDEGKAANSE SYSGGVEGLA VERENTDSAE GTRDRVDAAE 180 KSVTQSECDP EGGGVQGGPT LRRKRGRPLK SSERQTSIRA GPITPKLEEP RSVRINRGVK 240 RRYPGDESED DSLPKRVRVR SITNICGDFA QPIKGEDMSV EEAVEANPAR KRGRPRRGNR 300 VEGVAKADEA EVSAVPSSGK RKTIEAVLDS ESMKWACHGR NGPIFACNAE GCKKRFVEAA 360 SLYAHARVHG DRPYVCHYDG CIKSFSERSK LKRHFLIHTG EKPFLCVYEG CGKAFSLDFN 420 LRSHMKTHTG DYHECPYDGC DKRYCQEYKL RAHIVKEHNK SGKGTKKLAK VVGNGGGGLV 480 SVAGANVRDA AAAKKRAVVA ALQAKRSKLE SMKEARESRI AELEEEKERE AFELSRIERL 540 LKKVEGEQRR VEGQGGSPAM SVSASEEEEE EEEGEEGEGA CPSNGTGGDT SSSDEQQSRL 600 EYTAMGEGKD VVMFAHKLPT AHQAARLVRK GKPGGFVGKS GGPGFTPNFV AARGSAVSKG 660 VLGEGSWKKV ERLSRGCGAS PCGGGKVKSG QQEKRANGEA WSQGESSVSG AGKANGGVGG 720 KGGGGQAEGG SGKARVVGTK KSGASTGRGG ARRTNASTGT NEKGVRVSGG AEMARMDGKG 780 AKEVGTVSTQ QQQQGGGRES TSGAFLVSMN PILVSSDHGF SPTDARFLAN EGFPSLAQGL 840 LRERLQAKDG VKSMSGSACP PKEKAYRSMN EVLHSAAEAG FVGGGGGSEE FGGEQAAPEQ 900 SFEPSAAQLF TYHEQPRLVD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 8e-34 | 309 | 455 | 2 | 117 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 241 | RGVKRR |
2 | 718 | 724 | GGKGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391375.1 | 0.0 | uncharacterized protein LOC112289894 | ||||
TrEMBL | A0A2K1JPJ4 | 0.0 | A0A2K1JPJ4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S577_1V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 9e-45 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_5100V3.6.p |