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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_5100V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 918aa MW: 96711 Da PI: 5.9038 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00089 | 375 | 399 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ C ksFs +s LkrH H Pp3c12_5100V3.1.p 375 YVCHydGCIKSFSERSKLKRHFLIH 399 99*******************8877 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.8e-05 | 407 | 429 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C Cgk Fs nL++H++tH Pp3c12_5100V3.1.p 407 CVyeGCGKAFSLDFNLRSHMKTH 429 66669*****************9 PP | |||||||
3 | zf-C2H2 | 11.7 | 0.00081 | 434 | 459 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+k++ + + L+ Hi + H Pp3c12_5100V3.1.p 434 HECPydGCDKRYCQEYKLRAHIVKeH 459 78********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.66E-5 | 345 | 382 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-6 | 346 | 370 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.2 | 346 | 370 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.408 | 346 | 370 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 348 | 370 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.7E-13 | 373 | 397 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.815 | 375 | 404 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0065 | 375 | 399 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 377 | 399 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.26E-14 | 385 | 432 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-20 | 398 | 432 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.819 | 405 | 434 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.027 | 405 | 429 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 407 | 429 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 434 | 459 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.3E-5 | 436 | 455 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 436 | 459 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 918 aa Download sequence Send to blast |
MDRLDEASGG ADLAVQGENC LKQIASNYVE EEDGENCSGE EEGVGRENGA DSAAPGGHGG 60 GGRHGLGESV GVEVRDSAGH SGNESERREA SGESCDEEQG GGSSGEEEEE DGDDEEEGEE 120 GEQRHGGASV AENGFANLDE RDEGKAANSE SYSGGVEGLA VERENTDSAE GTRDRVDAAE 180 KSVTQSECDP EGGGVQGGPT LRRKRGRPLK SSERQTSIRA GPITPKLEEP RSVRINRGVK 240 RRYPGDESED DSLPKRVRVR SITNICGDFA QPIKGEDMSV EEAVEANPAR KRGRPRRGNR 300 VEGVAKADEA EVSAVPSSGK RKTIEAVLDS ESMKWACHGR NAGPIFACNA EGCKKRFVEA 360 ASLYAHARVH GDRPYVCHYD GCIKSFSERS KLKRHFLIHT GEKPFLCVYE GCGKAFSLDF 420 NLRSHMKTHT GDYHECPYDG CDKRYCQEYK LRAHIVKEHN KSGKGTKKLA KVVGNGGGVA 480 GANVRDAAAA KKRAVVAALQ AKRSKLESMK EARESRIAEL EEEKEREAFE LSRIERLLKK 540 VEGEQRRVEG QGGSPAMSVS ASEEEEEEEE GEEGEGACPS NGTGGDTSSS DEQQSRLEYT 600 AMGEGKDVVM FAHKLPTAHQ AARLVRKGKP GGFVGKSGGP GFTPNFVAAR GSAVSKGVLG 660 EGSWKKVERL SRGCGASPCG GGKVKSGQQE KRANGEAWSQ GESSVSGAGK ANGGVGGKGG 720 GGQAEGGSGK ARVVGTKKSG ASTGRGGARR TNASTGTNEK GVRVSGGAEM ARMDGKGAKE 780 VGTVSTQQQQ QGGGRESTSG AFLVSMNPIL VSSDHGFSPT DARFLANEGF PSLAQGLLRE 840 RLQAKDGVKS MSGSACPPKE KAYRSMNEVL HSAAEAGFVG GGGGSEEFGG EQAAPEQSFE 900 PSAAQLFTYH EQPRLVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 9e-34 | 309 | 456 | 2 | 117 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 241 | RGVKRR |
2 | 715 | 721 | GGKGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391375.1 | 0.0 | uncharacterized protein LOC112289894 | ||||
TrEMBL | A0A2K1JPJ4 | 0.0 | A0A2K1JPJ4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S577_1V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-44 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_5100V3.1.p |