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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_4630V3.2.p | ||||||||
Common Name | PHYPADRAFT_195760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26444.8 Da PI: 6.7704 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.6e-10 | 79 | 125 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f L l + + +K +Ka+iL Av+ + +L Pp3c12_4630V3.2.p 79 KACREKMRRDRLNDRFLDLSAALEPG---RPPKTDKATILSDAVRILTQL 125 678**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-12 | 67 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.182 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-7 | 78 | 130 | No hit | No description |
Pfam | PF00010 | 5.0E-8 | 79 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-8 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-11 | 81 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MMSSPSNTSK WMSYLAENLL AEEEVQPSNP FFWCTTQQPV EQIDCSIDNE CSKGESDVPE 60 KSCSRKRSRE EGSSGSGNKA CREKMRRDRL NDRFLDLSAA LEPGRPPKTD KATILSDAVR 120 ILTQLRAEAQ GLTESNNQLR ETIKDLKNEK NELREEKTRL KADKERLEQQ VKAMTIPAGY 180 MPHPAALHAA VAAFAAQTQA ASNKAAQIAG YPGMAMWQWM PPAAVDTSQD HVLRPPVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4243 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390784.1 | 1e-178 | transcription factor ILR3-like | ||||
Refseq | XP_024390785.1 | 1e-178 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 6e-76 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A9TJS4 | 1e-177 | A9TJS4_PHYPA; Predicted protein | ||||
STRING | PP1S246_45V6.3 | 1e-177 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_4630V3.2.p |
Entrez Gene | 5942046 |