PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_22270V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Protein Properties

Length: 224aa MW: 25249.7 Da PI: 8.214

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_22270V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.8	1.2e-10	4	68	35	98
EEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 35 tltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l+ +sgr v l++ + +++ ++ ++GWk Fv +ngLk+gD ++F+l+ +s+f +v++++ Pp3c12_22270V3.1.p 4 NVILQGPSGRLTVVHLTIrsyDVQDRVHFGGSGWKTFVLENGLKVGDHLIFSLVTKSTF--MVRLLS 68 578888999888888855344777777*************************9987888..888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.209	1	70	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.2E-10	4	67	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.74E-9	4	68	No hit	No description
SuperFamily	SSF101936	3.14E-12	4	67	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.3E-8	5	68	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.347	121	214	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.5E-10	129	213	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.98E-11	135	214	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MKANVILQGP SGRLTVVHLT IRSYDVQDRV HFGGSGWKTF VLENGLKVGD HLIFSLVTKS 60 TFMVRLLSEA PNDNNTRKVR CTKAPSEFRH SGPEPSVSNT FMGKSSESFV TPCEERSRLC 120 SRYREDEAES NLASKLCVPA EFFLKYEKFF AERINTFQGL TGRVVQLRFS STRNLSFTIG 180 WEDFRNENSI KLGDVLLFSL RAPGCWLVQL VESSVDELYM GND*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14531	1e-163	gametophore\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1JRW7	1e-164	A0A2K1JRW7_PHYPA; Uncharacterized protein
STRING	PP1S118_235V6.1	1e-104	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c12_22270V3.1.p