PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_22270V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 25249.7 Da PI: 8.214 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.8 | 1.2e-10 | 4 | 68 | 35 | 98 |
EEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 35 tltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l+ +sgr v l++ + +++ ++ ++GWk Fv +ngLk+gD ++F+l+ +s+f +v++++ Pp3c12_22270V3.1.p 4 NVILQGPSGRLTVVHLTIrsyDVQDRVHFGGSGWKTFVLENGLKVGDHLIFSLVTKSTF--MVRLLS 68 578888999888888855344777777*************************9987888..888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.209 | 1 | 70 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.2E-10 | 4 | 67 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-9 | 4 | 68 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-12 | 4 | 67 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.3E-8 | 5 | 68 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.347 | 121 | 214 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-10 | 129 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.98E-11 | 135 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MKANVILQGP SGRLTVVHLT IRSYDVQDRV HFGGSGWKTF VLENGLKVGD HLIFSLVTKS 60 TFMVRLLSEA PNDNNTRKVR CTKAPSEFRH SGPEPSVSNT FMGKSSESFV TPCEERSRLC 120 SRYREDEAES NLASKLCVPA EFFLKYEKFF AERINTFQGL TGRVVQLRFS STRNLSFTIG 180 WEDFRNENSI KLGDVLLFSL RAPGCWLVQL VESSVDELYM GND* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14531 | 1e-163 | gametophore| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1JRW7 | 1e-164 | A0A2K1JRW7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S118_235V6.1 | 1e-104 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_22270V3.1.p |