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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_2070V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Nin-like | ||||||||
Protein Properties | Length: 1234aa MW: 132886 Da PI: 5.8194 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.3 | 1.6e-28 | 772 | 822 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c12_2070V3.1.p 772 EKTIGLDVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIPRWPSRKINKV 822 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.211 | 756 | 842 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.3E-25 | 775 | 822 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.25E-21 | 1125 | 1213 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 3.3E-19 | 1130 | 1211 | No hit | No description |
SMART | SM00666 | 6.9E-18 | 1131 | 1213 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 23.919 | 1131 | 1213 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.3E-16 | 1132 | 1212 | IPR000270 | PB1 domain |
CDD | cd06407 | 7.63E-39 | 1132 | 1212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1234 aa Download sequence Send to blast |
MEMPPPNEQR FQPTLPRWRT SELLPFSQQL SPGGPFSGVD SKFLIDDSVL TDLMDLDPLC 60 DQNTEPWAIV GQDFGLPFAS FSPGVFSPGN FSPSAMSPPA SQVSQSSQLY AQVNTLMAVP 120 GGQFSSGVLV QDGGLSPSSS RLLDLLDQPA TSEGYLVAMT PGAGANFAEM PQIYITHGQG 180 SNPHSNSQGA AVTERLNDLG NDRINYGNNC GVVSMRANQG GELAPSSRVG ELQDENSQLI 240 DPASFDCTNG AQNAQYDMIT KSENSRKRLM TVGTKESLKD RMMQALRLIG RSCVDVLAQV 300 WMPVRTTDNQ TVLSTREQPF VLERKTDHMW TYRSISENYV FAVTGGFPGL PGRVYLQQVP 360 EWTPNVQFYS DHEYLRVKHA MACDVKGTLA VPVFEAGSRN CLAVIELVMK AEKVQYAPEI 420 DIICRALQAV NLSCSDGMEL PALEFRTQGR RVALAEISEV LTAVCETHNL PLAQTWVPGS 480 HHSLEKPSNN KKSRIESGGN SKSSGGSYSS SRVCLRTGDG PHYVKDSKMW GFRQACLEHF 540 LEKGQGVPGK AFASNQPAFE SDVKNYSKIK YPLGHYAQLF GLTAAVAIRL RSIHTGTDDF 600 VLEFFLPVNC TSSNDQQVML NSLSITMQRV CRSLRTVTDK EFADEVKAAT AEEKADAEST 660 LSKAMDPLED QGSGGASAMG SSFSENATEG DHLQEKLAQD PQVASASSLQ RSQSVASKNV 720 QMEESSEHVE PMSNGQKQTA AREAGALRTF TSIAQNAANP NRKLDKRRGT TEKTIGLDVL 780 QQYFAGSLKD AAKSIGVCPT TLKRICRQHG IPRWPSRKIN KVSRSLKKLQ GVIESVQGAD 840 GALQINALSG DIASAAVAAA AVTGVPAAKD ADTPEGRPAA SPSDGHLNKQ DGLINGESNQ 900 TPMSNLDEEF SPRDSQPSRH PAVASNLSYA RVGSKDAANL ANTTDTRSSP TDHTWNRNSD 960 ESSEGAGRDS TTYGDTQNFV TVSSEQELKG AVRKLDRKED ASANLDTPLL CLPNGSSSRS 1020 QCGASDSSMS EFCRNADSGS GTGFYGGAIC VESRVHGGAR ALAALRDSDL SSYGNPVACG 1080 RYPLEDSPRE VTGGHRTGSS QHNGSDSSSP SSGAGGHPRK HWPAPAPEPE AVTVKATFGA 1140 DTVRFKLLVK SSYLELRTEI SGRLKVDDQG FDLKYLDDEE EWMLITCDAD VKECIEVART 1200 LGRHTVKLMV RENGSRNSSG NNSNISLQVM TTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391180.1 | 0.0 | protein NLP3-like | ||||
TrEMBL | A0A2K1JP51 | 0.0 | A0A2K1JP51_PHYPA; Uncharacterized protein | ||||
STRING | PP1S128_79V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 1e-130 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_2070V3.1.p |