PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_17560V3.2.p | ||||||||
Common Name | PHYPADRAFT_74293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 455aa MW: 51029.7 Da PI: 7.8259 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.4 | 9.4e-12 | 54 | 152 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg....rsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 t ks++l lp f+ ehg k +++++l++ s+ W+v+l++ ++s + ++ GWk+F a +L++gD+++F l++ Pp3c12_17560V3.2.p 54 SNTDRPGKKSCLLGLPVWFVLEHGDK--FQRDVVLRSGSSpkpwMPWDVRLSVhVRYSTYpdVNFSYGWKGFSAACDLRVGDSLIFLLTEF 142 3344455677*************987..6679*****99999999999*998754444446788999********************9765 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 sef v+vfr+ Pp3c12_17560V3.2.p 143 SEF--EVHVFRR 152 888..9999997 PP | |||||||
2 | B3 | 39.8 | 8.2e-13 | 288 | 394 | 1 | 97 |
EEEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgr......yvltkGWkeFvkangLkeg 77 f+k+ tps+v ++ + l +pk f+ +hg k ++ ++l++ s+ + W+v ++++++++ + +t+GWk+F+ gL+ g Pp3c12_17560V3.2.p 288 FKKTITPSNVDRNnkkfCSLLMPKWFVLQHGDK--FQRSVVLRSGSSakpwQPWNVVVKMWRRPECenfsprVAFTAGWKDFATFCGLRIG 376 8899999*999999999999**********988..5567*****99999*********99666654566777******************* PP -EEEEEE-SSSEE..EEEEE CS B3 78 DfvvFkldgrsefelvvkvf 97 D vvF l + sef v+v+ Pp3c12_17560V3.2.p 377 DAVVFNLRKLSEF--DVHVV 394 ******8655888..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-16 | 45 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-14 | 46 | 151 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-15 | 46 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0049 | 47 | 153 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.842 | 51 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-7 | 56 | 152 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 280 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-17 | 283 | 395 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.37E-15 | 287 | 395 | No hit | No description |
SMART | SM01019 | 0.0024 | 288 | 397 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-8 | 288 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.898 | 292 | 397 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MARMHGASTV GDVDVDAKED EEEAWKVHRG NVKREQLLQS LQGSIHFEKI LTKSNTDRPG 60 KKSCLLGLPV WFVLEHGDKF QRDVVLRSGS SPKPWMPWDV RLSVHVRYST YPDVNFSYGW 120 KGFSAACDLR VGDSLIFLLT EFSEFEVHVF RRTENPDVSS LLTGENQGDD SDLFREKVSK 180 SHGSTSRYMP TESFVELVPH DSCGSIEKRG TIGGEGAVSA SPGGTSLKNS NCNMTTKGNE 240 QSTAMRTLVG TLECQVQPTV HHKENAIHFP KTGRFGQHTS KSPEVAYFKK TITPSNVDRN 300 NKKFCSLLMP KWFVLQHGDK FQRSVVLRSG SSAKPWQPWN VVVKMWRRPE CENFSPRVAF 360 TAGWKDFATF CGLRIGDAVV FNLRKLSEFD VHVVRGVGTS MPSAFQGPRN WDVVPEPLQE 420 IENILFTPPE LCMDLQKSPE HAGGDHQEHM ISFP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390570.1 | 0.0 | uncharacterized protein LOC112289544 | ||||
TrEMBL | A9S416 | 0.0 | A9S416_PHYPA; Predicted protein | ||||
STRING | PP1S46_251V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_17560V3.2.p |
Entrez Gene | 5924293 |
Publications ? help Back to Top | |||
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