PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_15190V3.11.p
Common NamePpVNS8
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 356aa    MW: 40649.9 Da    PI: 6.6066
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_15190V3.11.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28.2e-5081411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvka...eek..ewyfFskrdkkyatgkrknratksgyWk 84 
                          +p+GfrFhPt+eelv +yL kkv++++++l + i+e+d+yk+ePwdL++ ++++   +ek  ++yfFs++ kky+tg+r+nrat+ g+Wk
  Pp3c12_15190V3.11.p   8 VPVGFRFHPTEEELVGYYLPKKVSDRRIDL-DLIRELDLYKFEPWDLHQlCMTQggsNEKqiDYYFFSRKGKKYPTGTRANRATTMGFWK 96 
                          599***************************.99**************85433332333333466************************** PP

                  NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          atg+dk++++k +++l+g++ktLvfy+grap+g ktdW+mhe+rl
  Pp3c12_15190V3.11.p  97 ATGRDKPIHTKlNQTLIGMRKTLVFYQGRAPHGIKTDWIMHEFRL 141
                          **********988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-535162IPR003441NAC domain
PROSITE profilePS5100553.4278162IPR003441NAC domain
PfamPF023659.5E-259141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSRLAPKVPV GFRFHPTEEE LVGYYLPKKV SDRRIDLDLI RELDLYKFEP WDLHQLCMTQ  60
GGSNEKQIDY YFFSRKGKKY PTGTRANRAT TMGFWKATGR DKPIHTKLNQ TLIGMRKTLV  120
FYQGRAPHGI KTDWIMHEFR LDDGSERPTH DGGWVVCRVF KKNKNLMMEM QQERAISYEG  180
QMGALPPEAA GTPNVLPGDD QLTFLEKSSG VKREIISLDD YQLRQSNQYL NQRELGYPSS  240
LNRPDDVNYF MNSYQETSNS GLCEFNDPQT SSGSDDTELN HEETISGSFH DVDWSALLQD  300
PVRPAPVLKA SLRCPSMTKL VHDDVTGVLP QLKRQNSDIV SSLDLWNYAQ IAQPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-42816315169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980880.0AB898088.1 Physcomitrella patens PpVNS8 mRNA for NAC transcription factor PpVNS8, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390073.10.0NAC domain-containing protein 30-like isoform X2
RefseqXP_024390074.10.0NAC domain-containing protein 30-like isoform X2
RefseqXP_024390075.10.0NAC domain-containing protein 30-like isoform X2
RefseqXP_024390076.10.0NAC domain-containing protein 30-like isoform X2
TrEMBLX5IHC60.0X5IHC6_PHYPA; NAC transcription factor PpVNS8
STRINGPP1S70_104V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.14e-61NAC 007
Publications ? help Back to Top
  1. Xu B, et al.
    Contribution of NAC transcription factors to plant adaptation to land.
    Science, 2014. 343(6178): p. 1505-8
    [PMID:24652936]