PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_15190V3.11.p | ||||||||
Common Name | PpVNS8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 40649.9 Da PI: 6.6066 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.2 | 8.2e-50 | 8 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvka...eek..ewyfFskrdkkyatgkrknratksgyWk 84 +p+GfrFhPt+eelv +yL kkv++++++l + i+e+d+yk+ePwdL++ ++++ +ek ++yfFs++ kky+tg+r+nrat+ g+Wk Pp3c12_15190V3.11.p 8 VPVGFRFHPTEEELVGYYLPKKVSDRRIDL-DLIRELDLYKFEPWDLHQlCMTQggsNEKqiDYYFFSRKGKKYPTGTRANRATTMGFWK 96 599***************************.99**************85433332333333466************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk++++k +++l+g++ktLvfy+grap+g ktdW+mhe+rl Pp3c12_15190V3.11.p 97 ATGRDKPIHTKlNQTLIGMRKTLVFYQGRAPHGIKTDWIMHEFRL 141 **********988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-53 | 5 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.427 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-25 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MSRLAPKVPV GFRFHPTEEE LVGYYLPKKV SDRRIDLDLI RELDLYKFEP WDLHQLCMTQ 60 GGSNEKQIDY YFFSRKGKKY PTGTRANRAT TMGFWKATGR DKPIHTKLNQ TLIGMRKTLV 120 FYQGRAPHGI KTDWIMHEFR LDDGSERPTH DGGWVVCRVF KKNKNLMMEM QQERAISYEG 180 QMGALPPEAA GTPNVLPGDD QLTFLEKSSG VKREIISLDD YQLRQSNQYL NQRELGYPSS 240 LNRPDDVNYF MNSYQETSNS GLCEFNDPQT SSGSDDTELN HEETISGSFH DVDWSALLQD 300 PVRPAPVLKA SLRCPSMTKL VHDDVTGVLP QLKRQNSDIV SSLDLWNYAQ IAQPM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-42 | 8 | 163 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898088 | 0.0 | AB898088.1 Physcomitrella patens PpVNS8 mRNA for NAC transcription factor PpVNS8, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390073.1 | 0.0 | NAC domain-containing protein 30-like isoform X2 | ||||
Refseq | XP_024390074.1 | 0.0 | NAC domain-containing protein 30-like isoform X2 | ||||
Refseq | XP_024390075.1 | 0.0 | NAC domain-containing protein 30-like isoform X2 | ||||
Refseq | XP_024390076.1 | 0.0 | NAC domain-containing protein 30-like isoform X2 | ||||
TrEMBL | X5IHC6 | 0.0 | X5IHC6_PHYPA; NAC transcription factor PpVNS8 | ||||
STRING | PP1S70_104V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 4e-61 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_15190V3.11.p |
Publications ? help Back to Top | |||
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