PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_15190V3.10.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 387aa    MW: 44006.9 Da    PI: 6.5906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_15190V3.10.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.99.8e-50391721128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvka...eek..ewyfFskrdkkyatgkrknratksgyWk 84 
                          +p+GfrFhPt+eelv +yL kkv++++++l + i+e+d+yk+ePwdL++ ++++   +ek  ++yfFs++ kky+tg+r+nrat+ g+Wk
  Pp3c12_15190V3.10.p  39 VPVGFRFHPTEEELVGYYLPKKVSDRRIDL-DLIRELDLYKFEPWDLHQlCMTQggsNEKqiDYYFFSRKGKKYPTGTRANRATTMGFWK 127
                          599***************************.99**************85433332333333466************************** PP

                  NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          atg+dk++++k +++l+g++ktLvfy+grap+g ktdW+mhe+rl
  Pp3c12_15190V3.10.p 128 ATGRDKPIHTKlNQTLIGMRKTLVFYQGRAPHGIKTDWIMHEFRL 172
                          **********988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-5432193IPR003441NAC domain
PROSITE profilePS5100553.42739193IPR003441NAC domain
PfamPF023651.1E-2440172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVRECADGML MCCCGVDLCN CKQCKSSDPC KMSRLAPKVP VGFRFHPTEE ELVGYYLPKK  60
VSDRRIDLDL IRELDLYKFE PWDLHQLCMT QGGSNEKQID YYFFSRKGKK YPTGTRANRA  120
TTMGFWKATG RDKPIHTKLN QTLIGMRKTL VFYQGRAPHG IKTDWIMHEF RLDDGSERPT  180
HDGGWVVCRV FKKNKNLMME MQQERAISYE GQMGALPPEA AGTPNVLPGD DQLTFLEKSS  240
GVKREIISLD DYQLRQSNQY LNQRELGYPS SLNRPDDVNY FMNSYQETSN SGLCEFNDPQ  300
TSSGSDDTEL NHEETISGSF HDVDWSALLQ DPVRPAPVLK ASLRCPSMTK LVHDDVTGVL  360
PQLKRQNSDI VSSLDLWNYA QIAQPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-423919415169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980880.0AB898088.1 Physcomitrella patens PpVNS8 mRNA for NAC transcription factor PpVNS8, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390072.10.0NAC domain-containing protein 30-like isoform X1
TrEMBLX5IHC60.0X5IHC6_PHYPA; NAC transcription factor PpVNS8
STRINGPP1S70_104V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-60NAC 007