PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_14370V3.1.p
Common NameHB10
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 881aa    MW: 95987.3 Da    PI: 6.472
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_14370V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.1e-171573357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c12_14370V3.1.p 15 KYVRYTQEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 73
                        5678******************************9999*******************97 PP
2START151.57e-482054103203
                         HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
               START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                         aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  +    v e+l+d+++W ++++++e+l ++ +g  g++
  Pp3c12_14370V3.1.p 205 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDIS-KVTEVLKDRPRWLQDCRRMEILGALPTGngGTI 294
                         78999****************************************************.8888888888*********************** PP

                         EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
               START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         +l +++++a+++l+p Rd+ ++Ry+  l++g  vi+++S++  q  p+    +s+vR+e++pSg+li+p+++g++ +++v+h + + ++++
  Pp3c12_14370V3.1.p 295 ELLYTQMYAPTTLAPaRDYCTLRYTTILEDGNVVICERSLSGVQGGPTmppVQSFVRGEMYPSGYLIRPCDGGGCIIHVVDHYNNEPWSVP 385
                         ******************************************99999888899************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 179 wllrslvksglaegaktwvatlqrq 203
                         ++lr+l++s ++  +k ++a+l+++
  Pp3c12_14370V3.1.p 386 EVLRPLYESPAVLSQKSTLAALRHL 410
                         *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3861074IPR001356Homeobox domain
SuperFamilySSF466895.13E-161177IPR009057Homeodomain-like
SMARTSM003891.3E-131278IPR001356Homeobox domain
CDDcd000861.36E-151575No hitNo description
PfamPF000461.8E-141673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-171773IPR009057Homeodomain-like
CDDcd146860.0010467103No hitNo description
PROSITE profilePS5084821.443194408IPR002913START domain
CDDcd088759.08E-79198414No hitNo description
SMARTSM002345.5E-38203413IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-20204408IPR023393START-like domain
PfamPF018524.3E-45205410IPR002913START domain
SuperFamilySSF559612.61E-35205413No hitNo description
PfamPF086709.1E-43735877IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MTETWKDQTM DASGKYVRYT QEQVEALERV YHECPKPSSI RRHQLIKESP ILANIEPKQI  60
KVWFQNRRCR EKQRKEATRL VSVNAKLTAL NKLLMEENER LAKHTSQLTL ENHALRQQIP  120
NLPFPDGRHR LPSQILQSPL KKEGAVNGGD ESSTQGGICV KVHGQAGIAS TDTSCDSAVT  180
GGLPHRLTPQ HSPRDSSPAG LLATAEETLT EFLAKATGTA VDWIQLPGMK PGPDAIGIIA  240
ISHGCVGIAA RACGLVALDI SKVTEVLKDR PRWLQDCRRM EILGALPTGN GGTIELLYTQ  300
MYAPTTLAPA RDYCTLRYTT ILEDGNVVIC ERSLSGVQGG PTMPPVQSFV RGEMYPSGYL  360
IRPCDGGGCI IHVVDHYNNE PWSVPEVLRP LYESPAVLSQ KSTLAALRHL RRLAAEESGE  420
GVPRNGQHPA VLRTLCQRLT KGFNNAVNGF PDDGWEATIS DGLDDVSVML NATPKSMEGQ  480
IASDKLLYSL GGGILCAKAS MLLQNVPSSL LIRFLREHRS EWADYDIDAN VASFRSNGNG  540
YVPRCGGVSH VQLPLPLAYS GESGEILEVV KVEGHSSVQH MVLSRDTFLL QLCSGVDESA  600
VGACAQLVFA PVDVALADDI PLLPSGFCVS PIDTNVVDGF GLDRTLDLAS TLEGGNDLRL  660
NGDAKSSNSP GQMRSVLTIA FQFAYEVHTR ETVAAMARQY VRNVVASVQQ VAMALAPSRG  720
APPPRQVPSN PDALSLVRHV LSSYRFHMGI DLIRPENGSD EALFKAFWHH TDAIVCCALK  780
GIPEFVFANR SGLEMFETAT ASSLKDLDWE KTLNENDRKL SYATFTHVLQ QGYCSLPAGV  840
RMSSTGRTAT YEQALAWKVL NDSEAVECIA FLFINWSLAT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.1630.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3855180.0DQ385518.1 Physcomitrella patens class III homeodomain-leucine zipper protein HB10 (HB10) mRNA, complete cds.
GenBankDQ6572000.0DQ657200.1 Physcomitrella patens class III HD-Zip protein HB10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390746.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024390747.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024390748.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024390749.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024390750.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024390751.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ20BL70.0Q20BL7_PHYPA; Class III HD-Zip protein HB10
STRINGPP1S70_192V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Floyd SK,Zalewski CS,Bowman JL
    Evolution of class III homeodomain-leucine zipper genes in streptophytes.
    Genetics, 2006. 173(1): p. 373-88
    [PMID:16489224]
  3. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  4. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  5. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]