PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_12690V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 652aa MW: 72521.2 Da PI: 7.0048 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40 | 6.9e-13 | 162 | 261 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 f+kv + d ++g +vlpk+ +eeh ++k++++ +tl d g++W+++++++ ++++ y+++ +v++ +L+ gD+v F++ + Pp3c12_12690V3.4.p 162 FDKVASITDCRSTGHFVLPKRKVEEHfpPINKPGGIWMTLVDAAGKEWSFEFCFWHSKESriYYFK-KFYPYVQSTDLCGGDTVFFSRLE- 250 677777788899999*************99999********************9877777768887.7999****************665. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++l++++++ Pp3c12_12690V3.4.p 251 PQGTLFMGFRK 261 77777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-19 | 158 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.02E-10 | 160 | 261 | No hit | No description |
SuperFamily | SSF101936 | 9.03E-17 | 160 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.713 | 162 | 263 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-8 | 162 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-9 | 163 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.856 | 439 | 489 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.9E-9 | 444 | 486 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MLTGDFPSSS QSRVRHAQFT NYIALPCGEE PMDTRGIFQS SFGKSTPAHG DITKKSSSAL 60 ASTLSTCQVP GGASLLVGCV LGKSSSKPKH QIRGSIKRNP SERKKELLVT SSHDRGPTLN 120 GKGRPGTMAL PRSISINALR ISNLNSPQPS QKFLGTTMTF LFDKVASITD CRSTGHFVLP 180 KRKVEEHFPP INKPGGIWMT LVDAAGKEWS FEFCFWHSKE SRIYYFKKFY PYVQSTDLCG 240 GDTVFFSRLE PQGTLFMGFR KQKPSPPKDQ SKRREQSNGG PICLANDWSP SPDELANPQE 300 KPVTMSIDEG NCKYASERGT SQCKRKRKKE FPPVSLSKRT EVVDHLAADK ALVEKKSTTR 360 LSVSPEAPQH VDKISGVLGS KGKRLRVNVD EYSEWKDTQD LLRPAPGALP SVVTIEGHDF 420 EEYEKPPILI KRSCCSLEAR GESQWVKCDD CGSWRRLPAD AFVPEKWNCS DNDRDLTRAY 480 CNAPQEPIHH DSDQLQRFGL DVEGRIKDES ESREEVYEYD WATPEQHHSA RADACDYKQP 540 TLWSAAMTLI DGSLRRGTDS YSQLEKCSTY TSDSDSLDQS PSSALQSPRL EQFCELIEES 600 SPMSTNSHAT EAGRDLEVST DCDEPIDSAG NGKRYEMTTT ECYDFLGPPG K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 1e-22 | 154 | 261 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 1e-22 | 154 | 261 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 1e-22 | 154 | 261 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 1e-22 | 154 | 261 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 1e-22 | 154 | 261 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 1e-22 | 154 | 261 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 1e-22 | 154 | 261 | 16 | 123 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 328 | RKRKK |
2 | 324 | 329 | RKRKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390052.1 | 0.0 | B3 domain-containing transcription repressor VAL2-like isoform X5 | ||||
TrEMBL | A0A2K1JQJ8 | 0.0 | A0A2K1JQJ8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S261_36V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 6e-45 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_12690V3.4.p |