PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_10V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 456aa    MW: 50501.8 Da    PI: 5.9305
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_10V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS161.56.9e-502634422181
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      v+lLl++Aeav++gd+e+a+a+Larl+++ sp++ +++qR+a+yf eAL++r+++ +++ + +l + +  ++ ++ ++++a+  f evsP++kf
  Pp3c12_10V3.3.p 263 VNLLLRAAEAVDNGDAEMAKAILARLNQHISPSReQSIQRVAHYFREALETRIMG-WENFVVQLsQDRVLHPLEEFHKVNAYVRFCEVSPYHKF 355
                      799**************************9999879*******************.6666644436666666667888888888********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                      +h+taNqaIle +egee +HiiDf+++ G+QW+++lq +a  R+  +  p++R+T+vg      ++++++tg +L +fA+ + +  +f+ l
  Pp3c12_10V3.3.p 356 AHFTANQAILETLEGEESIHIIDFQMGAGAQWASFLQDIAcLRAagKAVPTVRLTVVGT----GADQIHATGANLCNFARLMSMLWNFRQL 442
                      ****************************************7777766689*********....9******************999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.112236455IPR005202Transcription factor GRAS
PfamPF035142.4E-47263442IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGDIQSVQRS RDIDTVMFEQ DSWSSNQHQM CHHLGDKPPS RLTLPDHFTG VPPNASARGD  60
CVAQSPLLGN SIYEDQLSQR NALTVDQTSL VMEERSVSMQ GSLLSSPSSL YAVHLNFPST  120
TPAYHHQEPE EGFEHRGILQ RSFSSLPSTA SQNQRIKAPA MMSGDYLHQL SWNAGRMSPQ  180
WQKLAPLNRS LRATGERKRE TINDRTLGAL SPLSTVPGFC LGRPQDPGDS CEQVGVELKQ  240
EDVNLDTESI DGGVIPEGGL AIVNLLLRAA EAVDNGDAEM AKAILARLNQ HISPSREQSI  300
QRVAHYFREA LETRIMGWEN FVVQLSQDRV LHPLEEFHKV NAYVRFCEVS PYHKFAHFTA  360
NQAILETLEG EESIHIIDFQ MGAGAQWASF LQDIACLRAA GKAVPTVRLT VVGTGADQIH  420
ATGANLCNFA RLMSMLWNFR QLSLDPNALK YQCFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2126843925192Protein SCARECROW
5b3h_A4e-2126843924191Protein SCARECROW
5b3h_D4e-2126843924191Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.164740.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1JNY50.0A0A2K1JNY5_PHYPA; Uncharacterized protein
STRINGPP1S205_1V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-28GRAS family protein