PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_8090V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 188aa MW: 21887.8 Da PI: 8.0729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_8090V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	170	184	2	16
EETTTTEEESSHHHH CS zf-C2H2 2 kCpdCgksFsrksnL 16 +Cp C+ksFs+ s++ Pp3c11_8090V3.1.p 170 SCPRCKKSFSHASSF 184 8***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50016	8.911	103	177	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	106	174	IPR019786	Zinc finger, PHD-type, conserved site
SuperFamily	SSF57903	3.32E-11	128	177	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50089	8.698	132	175	IPR001841	Zinc finger, RING-type
Pfam	PF00628	2.3E-7	132	176	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	5.9E-5	132	175	IPR001965	Zinc finger, PHD-type
Gene3D	G3DSA:3.30.40.10	1.1E-10	132	177	IPR013083	Zinc finger, RING/FYVE/PHD-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
LYQLLYRREP ILLSSVCEKL ALIVELHDLD IWTQYLYDWI EFFKQAISMA MENLSIAKYC 60 NILFTKRNYI YLQREVPTIL DIKTCCTIPC LKNVSLSECW YYSKNCTPCH LSIDDSIHPK 120 LALVPINLLY FVCSEKKGTA IILLCDQCQH RWHMACLTLL LVTLSSRNWS CPRCKKSFSH 180 ASSFDKN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1JTW9	1e-134	A0A2K1JTW9_PHYPA; Uncharacterized protein (Fragment)

Link Out ? help Back to Top
Phytozome	Pp3c11_8090V3.1.p