PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_480V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 418aa    MW: 47244.8 Da    PI: 8.5644
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_480V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.5e-06153177123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+  +Cg+ ++r+++L+rH+ tH
  Pp3c11_480V3.2.p 153 FSCSfeNCGRQYKRQDHLNRHLLTH 177
                       899999*****************99 PP
2zf-C2H216.72.1e-05183206223
                       EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                        C+   C+ sF+ + nL+rH+r+H
  Pp3c11_480V3.2.p 183 FCTweGCDLSFNVNANLQRHLRLH 206
                       688889****************99 PP
3zf-C2H221.18.1e-07226250223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +C+   Cgk+F+ +s+L++Hi + H
  Pp3c11_480V3.2.p 226 TCSepGCGKVFKYPSLLQTHIESvH 250
                       68888****************9988 PP
4zf-C2H214.20.00013261283423
                       T..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   4 p..dCgksFsrksnLkrHirt.H 23 
                           Cg+ F + s+Lk Hi++ H
  Pp3c11_480V3.2.p 261 VepGCGEIFDSLSQLKAHIKVaH 283
                       4459****************988 PP
5zf-C2H212.90.00034315339223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +Cp   C  s++ ksnL +Hir+ H
  Pp3c11_480V3.2.p 315 RCPhpGCVHSYTKKSNLDTHIRViH 339
                       79999*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.4125147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-6125151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.988125152IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-11137179No hitNo description
Gene3DG3DSA:3.30.160.607.3E-12152179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157153179IPR007087Zinc finger, C2H2
SMARTSM003550.0057153177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155177IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-5182206No hitNo description
SMARTSM003550.0028182206IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-7182206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743182206IPR007087Zinc finger, C2H2
PROSITE patternPS000280184206IPR007087Zinc finger, C2H2
SMARTSM003550.0017225250IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806225255IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-4226246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280227250IPR007087Zinc finger, C2H2
SMARTSM003550.77258283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260283IPR007087Zinc finger, C2H2
SMARTSM0035543286307IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-7297337IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.48E-6297352No hitNo description
PROSITE profilePS5015710.824314344IPR007087Zinc finger, C2H2
SMARTSM003550.048314339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280316339IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-4338367IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.4345371IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280347371IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSIRKCALRL RHKLQIQSPF SLKHPAALLC SISYVKETRS RHNWYFMTCA CVDYWAIMLP  60
QLESLSGLQA VALHGKMKQD SEEGIRIYSE ENDSSVRPAE ESNSNEAAGD NEDSKGGEGS  120
PRERFKCVVC GITPLKPSLL KQHLRAHSAE RPFSCSFENC GRQYKRQDHL NRHLLTHKGN  180
LFFCTWEGCD LSFNVNANLQ RHLRLHKKWD SNVLRGTKVE DNARLTCSEP GCGKVFKYPS  240
LLQTHIESVH DSSPVTQGIC VEPGCGEIFD SLSQLKAHIK VAHCYVVCET CGVSMLKNKL  300
KSHTQTHEGV QTLIRCPHPG CVHSYTKKSN LDTHIRVIHQ NVKPYDCSHA GCEMRFAYKV  360
VRDKHEKSGV HAQPELGGNF EAEDLEFSLK SRGGRKRLRL NQVDDLLPRK HVSQPHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-1413028120158PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-1413028120158PROTEIN (TRANSCRIPTION FACTOR IIIA)
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155960.0gametophore
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5747351e-170EU574735.1 Physcomitrella patens TFIIIA exon-skipping isofom mRNA, partial cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387832.10.0transcription factor IIIA-like isoform X1
TrEMBLA0A2K1JSY00.0A0A2K1JSY0_PHYPA; Uncharacterized protein
STRINGPP1S39_62V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.23e-60transcription factor IIIA