PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_480V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 372aa    MW: 41747.3 Da    PI: 7.9839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_480V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06107131123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+  +Cg+ ++r+++L+rH+ tH
  Pp3c11_480V3.1.p 107 FSCSfeNCGRQYKRQDHLNRHLLTH 131
                       899999*****************99 PP
2zf-C2H216.91.8e-05137160223
                       EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                        C+   C+ sF+ + nL+rH+r+H
  Pp3c11_480V3.1.p 137 FCTweGCDLSFNVNANLQRHLRLH 160
                       688889****************99 PP
3zf-C2H221.37e-07180204223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +C+   Cgk+F+ +s+L++Hi + H
  Pp3c11_480V3.1.p 180 TCSepGCGKVFKYPSLLQTHIESvH 204
                       68888****************9988 PP
4zf-C2H214.40.00011215237423
                       T..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   4 p..dCgksFsrksnLkrHirt.H 23 
                           Cg+ F + s+Lk Hi++ H
  Pp3c11_480V3.1.p 215 VepGCGEIFDSLSQLKAHIKVaH 237
                       4459****************988 PP
5zf-C2H213.10.0003269293223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +Cp   C  s++ ksnL +Hir+ H
  Pp3c11_480V3.1.p 269 RCPhpGCVHSYTKKSNLDTHIRViH 293
                       79999*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.98879106IPR007087Zinc finger, C2H2
SMARTSM003555.479101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-679105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-1191133No hitNo description
Gene3DG3DSA:3.30.160.604.2E-12106133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0057107131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.157107133IPR007087Zinc finger, C2H2
PROSITE patternPS000280109131IPR007087Zinc finger, C2H2
SuperFamilySSF576673.98E-5136160No hitNo description
PROSITE profilePS501579.743136160IPR007087Zinc finger, C2H2
SMARTSM003550.0028136160IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-7136160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806179209IPR007087Zinc finger, C2H2
SMARTSM003550.0017179204IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4180200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280181204IPR007087Zinc finger, C2H2
SMARTSM003550.77212237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214237IPR007087Zinc finger, C2H2
SMARTSM0035543240261IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-7251291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-6251306No hitNo description
SMARTSM003550.048268293IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824268298IPR007087Zinc finger, C2H2
PROSITE patternPS000280270293IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-4292321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.4299325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280301325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MTCACVDYWA IMLPQLESLS GLQAVALHGK MKQDSEEGIR IYSEENDSSV RPAEESNSNE  60
AAGDNEDSKG GEGSPRERFK CVVCGITPLK PSLLKQHLRA HSAERPFSCS FENCGRQYKR  120
QDHLNRHLLT HKGNLFFCTW EGCDLSFNVN ANLQRHLRLH KKWDSNVLRG TKVEDNARLT  180
CSEPGCGKVF KYPSLLQTHI ESVHDSSPVT QGICVEPGCG EIFDSLSQLK AHIKVAHCYV  240
VCETCGVSML KNKLKSHTQT HEGVQTLIRC PHPGCVHSYT KKSNLDTHIR VIHQNVKPYD  300
CSHAGCEMRF AYKVVRDKHE KSGVHAQPEL GGNFEAEDLE FSLKSRGGRK RLRLNQVDDL  360
LPRKHVSQPH E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-148423520158PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-148423520158PROTEIN (TRANSCRIPTION FACTOR IIIA)
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155961e-178gametophore
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5747351e-170EU574735.1 Physcomitrella patens TFIIIA exon-skipping isofom mRNA, partial cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387832.10.0transcription factor IIIA-like isoform X1
RefseqXP_024387833.10.0transcription factor IIIA-like isoform X2
TrEMBLA0A2K1JSY00.0A0A2K1JSY0_PHYPA; Uncharacterized protein
STRINGPP1S39_62V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-60transcription factor IIIA