PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_3960V3.1.p
Common NamePHYPADRAFT_173352
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 325aa    MW: 36333.3 Da    PI: 8.8101
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_3960V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.7e-11116173461
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                         kr rr++kNReAA+ sR+RKk +++ Le k+  Lea    L+  + + + e a+lk+
  Pp3c11_3960V3.1.p 116 PKRLRRLEKNREAASQSRARKKSYMKDLEVKCRMLEAHVAHLQRVMTMTSMENAALKD 173
                        59***********************************999998777777777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-13111178No hitNo description
SMARTSM003384.3E-11113177IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.289115178IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.0E-11117175No hitNo description
PfamPF001701.9E-9117174IPR004827Basic-leucine zipper domain
CDDcd147042.73E-20118169No hitNo description
PROSITE patternPS000360120135IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MESFDAEIDS VLDSLPFSAP CSNLSDSLFL SEEIDTIDEQ WWQQLTLPSP KHEGGLEDPE  60
EGAFLADENT GCGAISSSCS SPNVTSTSQP DVAAAPSSSL TKRSADSSPE FEQDDPKRLR  120
RLEKNREAAS QSRARKKSYM KDLEVKCRML EAHVAHLQRV MTMTSMENAA LKDELVRVKK  180
PKDSVKTGVA EPAVLESNSL PSEFLRHLSC HYPFPQQVPS PTAGHFQKFL LTLLQLLMLA  240
AVSGLRGPQN SLPQPIREVV SSIPMSMELY RAIEGGILGK THLRRKKTHL QYDSNFRWRG  300
RSSERRPSRR KCRRVKRLRS SQIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305314RPSRRKCRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.51330.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388291.10.0bZIP transcription factor 60-like
TrEMBLA9U2S50.0A9U2S5_PHYPA; Predicted protein
STRINGPP1S447_20V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.16e-08bZIP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]