PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_26670V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TCP
Protein Properties Length: 632aa    MW: 68243.2 Da    PI: 8.8682
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_26670V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.71.7e-371423402132
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesss 79 
                          g+kdrhsk+ T++g+RdRRvRls+++a +f+d+qd+LGfd++sk++eWL++ ak+ai+el ++             +       ++++ s
  Pp3c11_26670V3.2.p 142 SGGKDRHSKVNTAKGPRDRRVRLSVPTAVQFYDVQDRLGFDQPSKAVEWLIKHAKAAIDELEQLpsvrqgepaasfeQ-------QPQTTS 225
                         579*************************************************************87776433333330.......333333 PP

                 TCP  80 ssasnsssg.............................................................kaaksaakskksqksaasaln 109
                         s++s+ s+g                                                             ++++      +s +s+a  + 
  Pp3c11_26670V3.2.p 226 STVSTFSAGlpgvlaaplpessstsygtydshgqpammstfghtghgmeavmgpqhqhhhlasyglnfplEQQAGLFRAGSSGDSQAGGSG 316
                         3333222225566666666666666777777777788888888888888888888888899999999997444444466666666666688 PP

                 TCP 110 lak.esrakarararertrekmri 132
                          a+ esrakar+rarer +ek+ +
  Pp3c11_26670V3.2.p 317 TARvESRAKARERARERAKEKHIT 340
                         88889****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.8E-37143338IPR005333Transcription factor, TCP
PROSITE profilePS5136933.536144202IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.803320337IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MMTVSFTVST GDRRGLASST VRNRLLRIVC KEVPGHGCYA SKLQNEGLVG RGGKEEEQRR  60
QRLSEAEPAR QGQPQQQQQI AGYEISISGT EHSEKVEGLS KRGGGEGSSE ERRVRARPSD  120
QPSKSGPPGA ECTRPARAAR SSGGKDRHSK VNTAKGPRDR RVRLSVPTAV QFYDVQDRLG  180
FDQPSKAVEW LIKHAKAAID ELEQLPSVRQ GEPAASFEQQ PQTTSSTVST FSAGLPGVLA  240
APLPESSSTS YGTYDSHGQP AMMSTFGHTG HGMEAVMGPQ HQHHHLASYG LNFPLEQQAG  300
LFRAGSSGDS QAGGSGTARV ESRAKARERA RERAKEKHIT ERDPGTGRIS SSMVTHHVPA  360
SASAGMQQQH PHLVQSPYAN LPSQVSSALL HPFQASPAFN ASTGIHPPSR PPPPAATPYH  420
ASSYGFSESS FVYSGHYNPP PTPYNQAEPS LHQQQQQLPS VSHYFVENPP PPSHYSSSNP  480
QGMNTPKPMT LPGFSPGPAS SSLRASLFGS VISEQHQSLH YSSGSYLSPS GYYFPPSYAS  540
IAQRPPPSSS PLLGPSLPGS SLRPSQGTMR YTLPGMRSDQ EQARGHEQQQ QQEEELGTHD  600
QTPHSLDPNF YTSQIPARLQ GLEELEEEFK R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-21149202154Putative transcription factor PCF6
5zkt_B8e-21149202154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389832.10.0uncharacterized protein LOC112289114
TrEMBLA0A2K1JWG70.0A0A2K1JWG7_PHYPA; Uncharacterized protein
STRINGPP1S332_35V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.18e-31TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3