PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_25660V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 583aa    MW: 63713.3 Da    PI: 8.7272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_25660V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09397443354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +ah  +Er RR++ ++++++L  ++P       +K +K+++L  ++eYI +L
  Pp3c11_25660V3.2.p 397 EAHRRAERTRREKSKKKLDTLINIVPII-----TKRDKISVLSSTIEYIGHL 443
                         69*************************7.....6*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-12393454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.033394443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-11397456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-8397448No hitNo description
PfamPF000101.4E-6397443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-6400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MRKLVALRTL VCFPGRAKID GSCFCIEIAS TSLVSDTEMY RNAIQHFIDE SIGPYMYGLA  60
PPSIPATSRN LLRELAGTVL EDVVQTSPAM AISGSQSGLL GSLPLTAAGV VSVELAHENS  120
ALLTGITTNA TTGLDEAFEA MQYGNIVSSE EPYYHWTMPR SIIPYEDQSA LIPFQDMPNN  180
PTSLLDFEML GQLHSTDGAE LSGKELQQRV ALERAPKQIL PSTTTGYPSS NVFGSSWKGK  240
EILEAENLEF AKKSPESRLL PQRNTYALGR LALSSSQSVL AELPRVDLQT SPAVPSISNL  300
DTQILPSGWS SIHQMPLWHS LRSAFRAFGP LRSSTSSRIR KFPKRQPLIH QWVMRRLPNW  360
ETQRGRSQSD QNQRGVGSGN SDATLGNYYN PRSPNSEAHR RAERTRREKS KKKLDTLINI  420
VPIITKRDKI SVLSSTIEYI GHLRSRISNL EKEQEAALGA TGAKEATTSV AKFRTGKELG  480
SFNTEIAAGP SSSTTTPVVV EGILGGETMN INVETNYHAR SLIQLLSILQ ELDLGIISVA  540
SVCENVRFRA AVCVKNSRKS RTTPDSLQAT LLRVLEGNCG SE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399413RRAERTRREKSKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389618.10.0uncharacterized protein LOC112288996 isoform X2
TrEMBLA0A2K1JW950.0A0A2K1JW95_PHYPA; Uncharacterized protein
STRINGPP1S138_68V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-06bHLH family protein