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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_25660V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 583aa MW: 63713.3 Da PI: 8.7272 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.5e-09 | 397 | 443 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +ah +Er RR++ ++++++L ++P +K +K+++L ++eYI +L Pp3c11_25660V3.1.p 397 EAHRRAERTRREKSKKKLDTLINIVPII-----TKRDKISVLSSTIEYIGHL 443 69*************************7.....6*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.68E-12 | 393 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.033 | 394 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-11 | 397 | 456 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-8 | 397 | 448 | No hit | No description |
Pfam | PF00010 | 1.4E-6 | 397 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-6 | 400 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MRKLVALRTL VCFPGRAKID GSCFCIEIAS TSLVSDTEMY RNAIQHFIDE SIGPYMYGLA 60 PPSIPATSRN LLRELAGTVL EDVVQTSPAM AISGSQSGLL GSLPLTAAGV VSVELAHENS 120 ALLTGITTNA TTGLDEAFEA MQYGNIVSSE EPYYHWTMPR SIIPYEDQSA LIPFQDMPNN 180 PTSLLDFEML GQLHSTDGAE LSGKELQQRV ALERAPKQIL PSTTTGYPSS NVFGSSWKGK 240 EILEAENLEF AKKSPESRLL PQRNTYALGR LALSSSQSVL AELPRVDLQT SPAVPSISNL 300 DTQILPSGWS SIHQMPLWHS LRSAFRAFGP LRSSTSSRIR KFPKRQPLIH QWVMRRLPNW 360 ETQRGRSQSD QNQRGVGSGN SDATLGNYYN PRSPNSEAHR RAERTRREKS KKKLDTLINI 420 VPIITKRDKI SVLSSTIEYI GHLRSRISNL EKEQEAALGA TGAKEATTSV AKFRTGKELG 480 SFNTEIAAGP SSSTTTPVVV EGILGGETMN INVETNYHAR SLIQLLSILQ ELDLGIISVA 540 SVCENVRFRA AVCVKNSRKS RTTPDSLQAT LLRVLEGNCG SE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 399 | 413 | RRAERTRREKSKKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389618.1 | 0.0 | uncharacterized protein LOC112288996 isoform X2 | ||||
TrEMBL | A0A2K1JW95 | 0.0 | A0A2K1JW95_PHYPA; Uncharacterized protein | ||||
STRING | PP1S138_68V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 2e-06 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_25660V3.1.p |