PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_2350V3.1.p
Common NamePHYPADRAFT_72964
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 563aa    MW: 61212.2 Da    PI: 7.5929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_2350V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041248272123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++C+   C+k+F+++ ++k H +tH
  Pp3c11_2350V3.1.p 248 FRCQheGCNKTFKNPQTMKMHHKTH 272
                        89**********************9 PP
2zf-C2H215.16.6e-05303325223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+C+k+F   ++L+rH  + H
  Pp3c11_2350V3.1.p 303 RCPKCKKTFVGLYELRRHYGRkH 325
                        7*****************86666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.33E-7244273No hitNo description
Gene3DG3DSA:3.30.160.601.5E-8246272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887248277IPR007087Zinc finger, C2H2
SMARTSM003550.003248272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250272IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473302331IPR007087Zinc finger, C2H2
SMARTSM003550.12302325IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.41E-7302352No hitNo description
PROSITE patternPS000280304325IPR007087Zinc finger, C2H2
SMARTSM00355190332352IPR015880Zinc finger, C2H2-like
SMARTSM00355210358379IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAVAAQSLSL YSDTGLFSQV APVSNPTLML NDNGTVSYGS ATLSSASGQS LLSNFADGFS  60
FGNSSWSDTP YTPYSSISSF NFPNFPESSS SEVLCSSEDH SPDLLLMGSH SDFMSQINVA  120
PPSLVSTPAV MHPKLVSTLK NMVAPEPASP RHSSSQYSYY FFDQQLTSQQ QAANSQHQND  180
AAAHNPLLHF HHSADLKPTV DVSSSVSECS QAIPPTCSQS LKVEKSESED IIEAAVVSVD  240
VIQNRRPFRC QHEGCNKTFK NPQTMKMHHK THYTDNTFKA GQQPLPTLSN SLKAGHNKKI  300
PSRCPKCKKT FVGLYELRRH YGRKHSEGEK PHGCRKCGKR FYIEVDVRDH EKLCGEPIEC  360
KCGLKFAFKC NLVAHKKAHP ACQDAQTSLS TSSTTSGGAS SMINQSPSSS SDSDQSPGGI  420
NSPPSGRGTK RPREESINPE NSFHSTPLPE LKDIPEAPQF KCARHGYSGS LPFSSETNSS  480
WMSLPSISHY PEVPTFSHFN PMSTASLFPS PQQKPSGFSF KLREPMSFDQ SYPGSVAGLE  540
MGILNQLDSS TNSSLQSMVR LT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389451.10.0zinc finger protein JACKDAW-like
TrEMBLA9S0H60.0A9S0H6_PHYPA; Predicted protein
STRINGPP1S39_272V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-12WIP domain protein 5
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]