PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_23320V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27992.6 Da PI: 9.5959 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.9e-12 | 87 | 132 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ah +Er+RR+++ ++f +Lr+l+P+ +K++K++ L Av Y+++L Pp3c11_23320V3.1.p 87 AHARNERNRRQKLHDRFMTLRSLVPNI-----TKPDKVSLLGDAVLYVQDL 132 899***********************7.....7****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.919 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-15 | 86 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-14 | 86 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-9 | 87 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.93E-9 | 87 | 136 | No hit | No description |
SMART | SM00353 | 3.0E-12 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MTTGQTRRSA FKRWSPTDPM AVLRSSPKFQ QHLLKAALFT VPRAHATKKE EVQIQYSNEA 60 ETSAQLYSGM RSFRGGPYSS GGSSISAHAR NERNRRQKLH DRFMTLRSLV PNITKPDKVS 120 LLGDAVLYVQ DLHRRVTELE ASKAPTPKTP TEPRVEVTIE KNTAYLKLSS PWQDGLIIHI 180 LERLHDFHLE VVDVSARVSH DAVLNAQLKA KVMSSTDGDD NDDDEEEVAK TASTIEATLL 240 STIANVMSSA R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389665.1 | 0.0 | basic helix-loop-helix protein A-like isoform X2 | ||||
TrEMBL | A0A2K1JVY2 | 0.0 | A0A2K1JVY2_PHYPA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5226 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_23320V3.1.p |