PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_23000V3.2.p
Common NamePHYPADRAFT_71136
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 438aa    MW: 47246.9 Da    PI: 7.0963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_23000V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-08110159154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL   v+ +++L
  Pp3c11_23000V3.2.p 110 RKVHKADREKLRRDRLNEQFGELAGVLDPD----RPKNDKATILGDSVQVVNEL 159
                         5677889*******************9997....79********9999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.004109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-10110170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-7110164No hitNo description
PfamPF000105.1E-6110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-9110182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-5115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PRINTSPR012173.9E-10227239No hitNo description
PRINTSPR012173.9E-10244260No hitNo description
PRINTSPR012173.9E-10319340No hitNo description
PRINTSPR012173.9E-10345361No hitNo description
PRINTSPR012173.9E-10367384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAASSNSWLH QNLLPQHNAQ QQGSPHPLYH HSELPHVGSS QSGPLQHMNL AHVGHGMDSH  60
PPLHHGMHSA LHMPREMQQQ QDPHIPVHVG TGTSGRAVGP SENGDAASVR KVHKADREKL  120
RRDRLNEQFG ELAGVLDPDR PKNDKATILG DSVQVVNELR SEVKRLKCEQ TALLDESRDL  180
QQEKSELREE KAALKSETEN LQNQLQQRLR GMLPWISMDP TAALMGAPPY PYPHPMPVPQ  240
PPPSPPPSST PPASESASGL TTSQPSVVGP SPFLSLAPPG VYMHPYAMYG ARSPDGGHPY  300
MPYPPYPGSV GNHSQVERPY AQYPSPIPTM PGYLVQMQPP PPQGPANASA VPMYRPPPPP  360
YAVSGISLVP PGHQPRVPPH STNPPINGPQ AASPEPHGVE TSLQLQTPGG SSRSPSTSEL  420
PPSQRSGEPS KTHETWN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.53440.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388559.10.0transcription factor BHLH062-like isoform X3
TrEMBLA9RVD90.0A9RVD9_PHYPA; Predicted protein
STRINGPP1S31_147V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-35bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]