PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21750V3.1.p
Common NamePHYPADRAFT_161316
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 415aa    MW: 46575.9 Da    PI: 6.7224
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21750V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-14151237186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Li a re+ ++l r++ + ++W ev+k +    + ++ +++++qC+ k ++l+kry+++k+   ++   +  ++p+f+ l+
  Pp3c11_21750V3.1.p 151 EWSEAATAVLISAFREKFHALDRNNFRSKDWGEVAKEVnthcANEKTHKTQEQCRMKVDSLKKRYRQEKDKLAGN---VPCKWPWFEALD 237
                         5***********************************999999999****************************95...6778*****998 PP
2FLO_LFY25.81.4e-0830838249123
             FLO_LFY  49 r.....eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleee 123
                         +      l++++++  vr + + k+a   +tv tL++m + eld++m+   e f  +   Ger G+kaa+ +++r+l ++
  Pp3c11_21750V3.1.p 308 EdnievLLQDFLEEDTVRDF-AKKLASSKYTVATLLEMSESELDEIMT---EEFP-EAARGERRGFKAAIWSKKRKLCQD 382
                         12223478999999999987.689*********************996...4553.6677***************99873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-20150239No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEEEDDQQST GAVESSHRQQ QSRRSNSANT ISNHTLAISN VAAATDTCIV PSHEEGDELH  60
HHQVVQVAVS NLPDYDHDHQ HHPMHHHHHH PHHQHHHHHH EHHHLAPPLP PPLHLHDSVA  120
DLGDVEGIVG SGGDKTDRPL LKSAGREPAT EWSEAATAVL ISAFREKFHA LDRNNFRSKD  180
WGEVAKEVNT HCANEKTHKT QEQCRMKVDS LKKRYRQEKD KLAGNVPCKW PWFEALDELI  240
GGSPKQSRIG SARKQARFGT SPSPRPPCGL LTPYFGGVSS SIYLKKKIAK VVSLQDSIRQ  300
MQMAGTLEDN IEVLLQDFLE EDTVRDFAKK LASSKYTVAT LLEMSESELD EIMTEEFPEA  360
ARGERRGFKA AIWSKKRKLC QDVGDDLDMV NASESIMETS DNFAKKEKSG SFVR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.25160.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388664.10.0uncharacterized protein LOC112288584
TrEMBLA0A2K1JVM90.0A0A2K1JVM9_PHYPA; Uncharacterized protein
STRINGPP1S31_257V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.22e-23Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]