PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_21360V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YA

Protein Properties

Length: 277aa MW: 29420.5 Da PI: 8.139

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_21360V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.7	3.9e-33	109	165	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF Pp3c11_21360V3.1.p 109 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHQHALRRARGNGGRF 165 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.9E-38	107	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.916	108	168	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.4E-28	110	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.4E-24	111	133	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	113	133	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.4E-24	142	165	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MQAPSSAPAV TESALPTMQA LPQPGYATSG ADDQPPRPPT GVPATGDYLL PHTQLELGHS 60 MAQARAAYPF ADPYFGGIVA AYGAQAVIHP HMLGVQQARM PLPSEMMEEE PVYVNAKQYH 120 GILRRRQSRA KAESENKLIK SRKPYLHESR HQHALRRARG NGGRFLNTKT KDGESKANSD 180 GSHGSHEGQS SQAANVSSTR ASHSGMGMLG GQGDNVNYHT SMMQHGQNNA YLNLHPPQSF 240 HSSAFHTLPG GSESEDGGSN GNNLVVSGSE HTAVAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-23	109	172	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388758.1	0.0	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	2e-40	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2K1JVK4	0.0	A0A2K1JVK4_PHYPA; Uncharacterized protein
STRING	PP1S31_299V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-34	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Pp3c11_21360V3.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]