PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Regulation |

Basic Information? help Back to Top

TF ID

Pp3c11_20880V3.6.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 294aa MW: 32901 Da PI: 9.6068

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_20880V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.2e-07	10	33	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC f+r G C++ +C+FaHg Pp3c11_20880V3.6.p 10 YKTKLCTLFSR-GSCPR-QSCSFAHG 33 9********.*.*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.765	9	35	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.08E-5	9	38	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-11	9	39	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-5	10	33	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MAFGRDLDLY KTKLCTLFSR GSCPRQSCSF AHGNAELRRL SGHPDSRSVG LRSRFERESP 60 LSQLRRSHSQ ERRGRGFRGS PFQDSDYCRS PAKRRRSRSL TAPEPSEFRR RDIKTARIEA 120 NEPHLSDVSA EDLGTDSPGA DKDVKSQSAK EASHMRDSLE EQLAEVKDDN KVLVDEKTKL 180 ELVLESKKNE TSELNEKVTT LNERVAGVQE DCKGITSRTR KLVKVYKVFV RAQDELKKAQ 240 AKLIKLVDDG IVESYSKNMD LNNMKGLLPS HGGMFGDTAT PLDGSISLEA TQR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2758	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388955.1	0.0	zinc finger CCCH domain-containing protein 13-like isoform X2
TrEMBL	A0A2K1JVH8	0.0	A0A2K1JVH8_PHYPA; Uncharacterized protein
STRING	PP1S31_349V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	2e-26	C3H family protein

Link Out ? help Back to Top
Phytozome	Pp3c11_20880V3.6.p