PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c11_20560V3.3.p | ||||||||
Common Name | PHYPADRAFT_178680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 222aa MW: 24828 Da PI: 6.6823 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.7e-07 | 4 | 34 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e +++lfC ++ lC +C ++ H+ Pp3c11_20560V3.3.p 4 LCDVCEAAPARLFCAADEAALCLKCDEKVHS 34 7***************************993 PP | |||||||
2 | zf-B_box | 26.9 | 1e-08 | 53 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 ++C+ +e+ ++ +fC +++ lC +C + H g H+ Pp3c11_20560V3.3.p 53 VPRCDICENAPAFFFCGVDGTSLCLQCDMDVHVGgkkaHE 92 689***************************9966666675 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.48 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.3E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.9E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.28E-7 | 3 | 34 | No hit | No description |
PROSITE profile | PS50119 | 8.788 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-9 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.9E-7 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.97E-7 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MRTLCDVCEA APARLFCAAD EAALCLKCDE KVHSCNKLAY RHVRLELAES RPVPRCDICE 60 NAPAFFFCGV DGTSLCLQCD MDVHVGGKKA HERYLMMRQR VELPSRKLRF EDTVDTEKPT 120 AEPNSVPADK NGTLLPDQHH HHHYHHHHHH HHHEDELRAG LPASKPSCDR DNSNAPAIAI 180 AAGDEESLLL DDCLVQNQSR MIDLNSRPKR LQNQASVPDK G* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.12528 | 0.0 | gametophore| protonema |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387802.1 | 1e-162 | B-box zinc finger protein 18-like | ||||
Refseq | XP_024387803.1 | 1e-162 | B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 2e-50 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A9RVR6 | 1e-161 | A9RVR6_PHYPA; Predicted protein | ||||
STRING | PP1S31_376V6.1 | 1e-162 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 5e-53 | DBB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c11_20560V3.3.p |
Entrez Gene | 5921496 |
Publications ? help Back to Top | |||
---|---|---|---|
|