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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_20170V3.6.p | ||||||||
Common Name | PHYPADRAFT_166708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36274.7 Da PI: 7.1888 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.6 | 8.1e-07 | 24 | 71 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + rEr RRd++N+ f++L +l + + +K++K +iL + + +k+L Pp3c11_20170V3.6.p 24 LQKADRERLRRDHLNEQFAKLAGVLDPiR-----PKNDKGTILSEGILALKEL 71 56778******************999955.....8********9877766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.395 | 21 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-10 | 21 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-10 | 21 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.29E-5 | 22 | 76 | No hit | No description |
Pfam | PF00010 | 2.1E-4 | 24 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MANPEYRGRV AGEENCHLMP ARKLQKADRE RLRRDHLNEQ FAKLAGVLDP IRPKNDKGTI 60 LSEGILALKE LRAEIARLKS EQIALRDESR DLTVERCELQ EEKTLLETET ERLEDLRKQN 120 SENLSALAGW KMDHPGVLTS SQYPCPLPVS SMTKSSPPSK DIHQDPSSDQ THHAPDSSFL 180 PAAPFSTFLH PAYQTYGVFG SRKSPFMSYN HYSHPGHTTH VERPAARYPA PIHPTPIYPV 240 KGAQTKSTEP SVVATELQLQ TPGLPPSPTH QQSLSGNEQR EKRVDRALDV LRDSGIDGTK 300 AASCNDNFAP QLSLSSNALA LQVVQSV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3002 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389006.1 | 0.0 | transcription factor bHLH121-like isoform X3 | ||||
TrEMBL | A9SV25 | 0.0 | A9SV25_PHYPA; Predicted protein | ||||
STRING | PP1S123_2V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.2 | 4e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_20170V3.6.p |
Entrez Gene | 5933486 |
Publications ? help Back to Top | |||
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