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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_15370V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 602aa MW: 67398 Da PI: 5.8655 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.4e-14 | 408 | 454 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N++f Lr+++P+ K++Ka+ Le A+ YI++Lq Pp3c11_15370V3.4.p 408 NHVQAERQRREKLNQKFYALRSVVPNV-----SKMDKASLLEDAITYINELQ 454 6999**********************6.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.4E-60 | 51 | 228 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.59E-15 | 402 | 458 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-19 | 404 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.352 | 404 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-11 | 408 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-19 | 408 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-17 | 410 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MEMSQLLNAW EVADSAMIEA FMGTGYNCVE GFEVQDDPDG QLHLNESVLL RRLHSLVEES 60 TVDWTYAIFW QLSALREGEM MLGWGDGYFR SAKENEINDA RNMKGGSQEE DQQMRRKVLR 120 ELQALVNGSE DDVSDYVTDT EWFYLVSMSH SYAAGVGTPG RALASDRPVW LIGANKAPDN 180 NCSRVQLAKM AGIQTILCIP SKSGVVELGS TDLIRESWEV VQNVKMVFDE PMMWAAHEIQ 240 AVAHSLPLSS DATSMRPSSP SLMSIATISA SISNASQIGR CSNPSQDHEA HFVGRKNPPS 300 SRPPMRFYKP RVEELSSDTP ETNLVDNKYI VGKSVSFHHL SKIGQRGMPG PPTTANRLPC 360 FAPSEVDCHE SEADVSVKEN VVESSTNLEP KPRKRGRKPA NDREEPLNHV QAERQRREKL 420 NQKFYALRSV VPNVSKMDKA SLLEDAITYI NELQEKLQKA EAELKVFQRQ VLASTGESKK 480 PNPSRRDSTE SSDEERFRLQ ESGQRSAPLV HTSENKPVIS VFVLGEEAMI RVYCTRHSNF 540 IVHMMSALEK LRLEVIHSNT SSMKDMLLHV VIVKIDSTQT YTQEQLGKIL ERSYVPDHSA 600 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 2e-40 | 13 | 224 | 13 | 227 | Transcription factor MYC3 |
4ywc_A | 2e-40 | 13 | 224 | 13 | 227 | Transcription factor MYC3 |
4ywc_B | 2e-40 | 13 | 224 | 13 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00084 | PBM | Transfer from AT1G32640 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388254.1 | 0.0 | transcription factor MYC3-like isoform X1 | ||||
Refseq | XP_024388255.1 | 0.0 | transcription factor MYC3-like isoform X1 | ||||
TrEMBL | A9RIS2 | 0.0 | A9RIS2_PHYPA; Predicted protein | ||||
STRING | PP1S11_350V6.2 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 1e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_15370V3.4.p |