PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_15370V3.14.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 303aa    MW: 33746.5 Da    PI: 8.892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_15370V3.14.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14230276455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h ++Er+RR+++N++f  Lr+++P+       K++Ka+ Le A+ YI++Lq
  Pp3c11_15370V3.14.p 230 NHVQAERQRREKLNQKFYALRSVVPNV-----SKMDKASLLEDAITYINELQ 276
                          6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-141050IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.09E-15224280No hitNo description
SuperFamilySSF474594.84E-19224293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.352226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-19230291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-12230276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MNSHLVLYQG QMAGIQTILC IPSKSGVVEL GSTDLIRESW EVVQNVKMVF DEPMMWAAHE  60
IQAVAHSLPL SSDATSMRPS SPSLMSIATI SASISNASQI GRCSNPSQDH EAHFVGRKNP  120
PSSRPPMRFY KPRVEELSSD TPETNLVDNK YIVGKSVSFH HLSKIGQRGM PGPPTTANRL  180
PCFAPSEVDC HESEADVSVK ENVVESSTNL EPKPRKRGRK PANDREEPLN HVQAERQRRE  240
KLNQKFYALR SVVPNVSKMD KASLLEDAIT YINELQEKLQ KAEAELKVFQ RLIRLRPILK  300
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27225285363Transcription factor MYC2
5gnj_B2e-27225285363Transcription factor MYC2
5gnj_E2e-27225285363Transcription factor MYC2
5gnj_F2e-27225285363Transcription factor MYC2
5gnj_G2e-27225285363Transcription factor MYC2
5gnj_I2e-27225285363Transcription factor MYC2
5gnj_M2e-27225285363Transcription factor MYC2
5gnj_N2e-27225285363Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388254.10.0transcription factor MYC3-like isoform X1
RefseqXP_024388255.10.0transcription factor MYC3-like isoform X1
RefseqXP_024388257.10.0transcription factor MYC3-like isoform X2
TrEMBLA0A2K1JUU90.0A0A2K1JUU9_PHYPA; Uncharacterized protein
STRINGPP1S11_350V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.16e-38bHLH family protein