PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c11_15260V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 678aa MW: 74112.5 Da PI: 5.2587 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 465 | 5.1e-142 | 44 | 456 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaa................tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYg 75 +el+krmw+d+++lkr+ke +k++ + + +k++++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYg Pp3c11_15260V3.2.p 44 DELEKRMWRDKIRLKRIKELRKDREM-RGGVggdgrhgsvgdgerggVMTKQHKQSQEQARRKKMSRAQDGILKYMLKMMEVCQAQGFVYG 133 79*****************9888532.333245677778888888777777778************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT CS EIN3 76 iipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplek 166 iipekgkpv+gasd++raWWkekv+fdrngpaai+kyqa+++++++ +++ ++ ++h+l+elqDTtlgSLLsalmqhcdppqrr+plek Pp3c11_15260V3.2.p 134 IIPEKGKPVSGASDNIRAWWKEKVRFDRNGPAAIAKYQADHALPGKPKGN-VSTAPTPHTLQELQDTTLGSLLSALMQHCDPPQRRYPLEK 223 *******************************************9988887.669************************************* PP --HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS EIN3 167 gvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257 gv+pPWWP+G+e+ww++lgl+k qg+ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++lsvlnqee ++ Pp3c11_15260V3.2.p 224 GVPPPWWPSGEEEWWPQLGLPKGQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLSVLNQEEGLA 314 ******************************************************************************************* PP --XXXX..XX..XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.......................................... CS EIN3 258 atvsah..ss..slrkqspkvtlsceqkedvegkkeskikhvqavktta.......................................... 302 ++ s s ++ v +++++ dv+g ++s + +++ ++ Pp3c11_15260V3.2.p 315 RQQSGAggSVgtPGYQNGGGVAGNSSNEFDVDGVNDSPAGLSGSDEGQHvetddyepfagsrpafsaakggadrdsdsldsvydkssiklq 405 999988542254334477788888888999995555543433333333344556777********************************** PP ..XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 303 ..gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 ++ ++k+ ++e ++++++ +++c + ++++se ++ f d++ ++ ++ Pp3c11_15260V3.2.p 406 dgDVVDDGRKKRSSGEAQSMEQR--VYMCPHTNCKHSEWRNAFVDRELRNMHQ 456 75444444555566666666544..7************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 2.3E-128 | 44 | 311 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 2.9E-74 | 185 | 317 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 7.19E-62 | 190 | 314 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 678 aa Download sequence Send to blast |
MERGGEVEYG GMMEMGDFMS ENDDGEGLMM QDGEETSDEE MDVDELEKRM WRDKIRLKRI 60 KELRKDREMR GGVGGDGRHG SVGDGERGGV MTKQHKQSQE QARRKKMSRA QDGILKYMLK 120 MMEVCQAQGF VYGIIPEKGK PVSGASDNIR AWWKEKVRFD RNGPAAIAKY QADHALPGKP 180 KGNVSTAPTP HTLQELQDTT LGSLLSALMQ HCDPPQRRYP LEKGVPPPWW PSGEEEWWPQ 240 LGLPKGQGAP PYKKPHDLKK AWKVGVLTAV IKHMSPDIAK IRKLVRQSKC LQDKMTAKES 300 ATWLSVLNQE EGLARQQSGA GGSVGTPGYQ NGGGVAGNSS NEFDVDGVND SPAGLSGSDE 360 GQHVETDDYE PFAGSRPAFS AAKGGADRDS DSLDSVYDKS SIKLQDGDVV DDGRKKRSSG 420 EAQSMEQRVY MCPHTNCKHS EWRNAFVDRE LRNMHQSSCM FRPVAPASGN NSMYSGNSQA 480 QGLSGDGLYQ FGGMAGSHVG VAHAGASYAP ITLPVPVQNM SSMPNLQNMQ GGNGDRQPIH 540 DLFATLYGAD GMHPGDGRHS GIDGSEINNG LLAIENCMVN HQQRQMETTD FVADDNMFGQ 600 SFGEGPNVAD VSLENQGCLP KDGKVFEHTF DHHQGVELPS EYNFSTPFDI GIEPSVPMGP 660 ASIDHLLEED FIWYFGA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 7e-79 | 189 | 316 | 2 | 129 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 7e-79 | 189 | 316 | 2 | 129 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.15998 | 0.0 | gametophore| protonema |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389127.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 1e-156 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2K1JUU1 | 0.0 | A0A2K1JUU1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S11_337V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20770.1 | 1e-132 | EIL family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c11_15260V3.2.p |