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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pp3c11_11230V3.9.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
LBD |
| Protein Properties |
Length: 252aa MW: 27385.9 Da PI: 7.973 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c11_11230V3.9.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 124.9 | 3.9e-39 | 6 | 107 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C aCk+lrrkC+++C++apyf aeq +++fa+vhk+FGasnv kll ++p ++r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l
Pp3c11_11230V3.9.p 6 PCGACKFLRRKCVRGCIFAPYFGAEQgAARFAAVHKIFGASNVAKLLLHIPVSRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVASL 96
7***********************9989*************************************************************** PP
DUF260 91 kaelallkeel 101
+aela+++++l
Pp3c11_11230V3.9.p 97 QAELAMVQAQL 107
*******9985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MSSGAPCGAC KFLRRKCVRG CIFAPYFGAE QGAARFAAVH KIFGASNVAK LLLHIPVSRR 60
CDAVLTISYE AQARLSDPVY GCVATIFALQ QQVASLQAEL AMVQAQLVNR QAVAHQIHQH 120
QQQHHQHHHH LQQHEQIGTI SPGHVVPSSA YMQQQEHAQM SPSDISMSMP SGSGSHGPGS 180
YNSRVKEEGN SFLGMQHYAD LGMGSSSLEP MPENQHSLLS NLHKARGSGE NMEQTDHEGE 240
LQALASLLRR K*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ly0_A | 1e-36 | 3 | 108 | 8 | 112 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 1e-36 | 3 | 108 | 8 | 112 | LOB family transfactor Ramosa2.1 |
