PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_11230V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 27385.9 Da PI: 7.973 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.9 | 3.9e-39 | 6 | 107 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++apyf aeq +++fa+vhk+FGasnv kll ++p ++r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l Pp3c11_11230V3.3.p 6 PCGACKFLRRKCVRGCIFAPYFGAEQgAARFAAVHKIFGASNVAKLLLHIPVSRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVASL 96 7***********************9989*************************************************************** PP DUF260 91 kaelallkeel 101 +aela+++++l Pp3c11_11230V3.3.p 97 QAELAMVQAQL 107 *******9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.121 | 5 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-38 | 6 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSSGAPCGAC KFLRRKCVRG CIFAPYFGAE QGAARFAAVH KIFGASNVAK LLLHIPVSRR 60 CDAVLTISYE AQARLSDPVY GCVATIFALQ QQVASLQAEL AMVQAQLVNR QAVAHQIHQH 120 QQQHHQHHHH LQQHEQIGTI SPGHVVPSSA YMQQQEHAQM SPSDISMSMP SGSGSHGPGS 180 YNSRVKEEGN SFLGMQHYAD LGMGSSSLEP MPENQHSLLS NLHKARGSGE NMEQTDHEGE 240 LQALASLLRR K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 3 | 108 | 8 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 3 | 108 | 8 | 112 | LOB family transfactor Ramosa2.1 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7646 | 1e-135 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389181.1 | 0.0 | LOB domain-containing protein 29-like | ||||
Refseq | XP_024389182.1 | 0.0 | LOB domain-containing protein 29-like | ||||
Refseq | XP_024389183.1 | 0.0 | LOB domain-containing protein 29-like | ||||
Refseq | XP_024389184.1 | 0.0 | LOB domain-containing protein 29-like | ||||
Refseq | XP_024389185.1 | 0.0 | LOB domain-containing protein 29-like | ||||
Refseq | XP_024389186.1 | 0.0 | LOB domain-containing protein 29-like | ||||
Refseq | XP_024389187.1 | 0.0 | LOB domain-containing protein 29-like | ||||
TrEMBL | A0A2K1JUB4 | 0.0 | A0A2K1JUB4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S261_2V6.1 | 2e-96 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 8e-63 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_11230V3.3.p |