PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_4280V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 546aa    MW: 58532.9 Da    PI: 5.0329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_4280V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12365407754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++ +Lr+++Pk      +K++ a+iL  A+eY+k+L
  Pp3c10_4280V3.1.p 365 MAERRRRKKLNDRLYTLRSVVPKI-----TKMDRASILGDAIEYLKEL 407
                        79*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.917358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16361430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-10364407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-13365411No hitNo description
Gene3DG3DSA:4.10.280.108.3E-15365423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.60E-6474515No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MASQSNSDMW MGAASSEISL PSNPALELEE ETSWKVSTSS QSTSNIEVKE NVGTPSFSKG  60
VLDEEWYTPE TSLMELSYSL PYGISDTRTG FGMLESSLNF DSSSNLMSSF RPAPSALSMG  120
LESNRSLEDL VCTGGQLGRS TVMESFSSGL PTSFNQGIIN AGGSITNITS SNINNVRSNF  180
PLMASPSNFS DAYRARSVSE DKSGKVVGSG GPRNELVPYH RNKGAETRSH GQGQQTLFLK  240
RAASRRCAGS SGTVSPVSKS PPRVVTSASN DSSVDTPDKD SPHPRNAHLQ SASGRLNINS  300
GSDDPNDMGL DGDDYDAKDD DDLDESGDGS GGPYEVEEGA GNGADQSIGK GNGKGKRGLP  360
AKNLMAERRR RKKLNDRLYT LRSVVPKITK MDRASILGDA IEYLKELLQR INEIHNELEA  420
AKLEQSRSMP SSPTPRSTQG YPATVKEECP VLPNPESQPP RVEVRKREGQ ALNIHMFCAR  480
RPGLLLSTVK ALDALGLDVQ QAVISCFNGF ALDLFRAEAK DVDVGPEEIK AVLLLTAGCD  540
LHSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14357424377Transcription factor MYC2
5gnj_B2e-14357424377Transcription factor MYC2
5gnj_E2e-14357424377Transcription factor MYC2
5gnj_F2e-14357424377Transcription factor MYC2
5gnj_G2e-14357424377Transcription factor MYC2
5gnj_I2e-14357424377Transcription factor MYC2
5gnj_M2e-14357424377Transcription factor MYC2
5gnj_N2e-14357424377Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366373ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.80260.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386995.10.0hyphally regulated cell wall protein 3-like isoform X3
TrEMBLA0A2K1JXN50.0A0A2K1JXN5_PHYPA; Uncharacterized protein
STRINGPP1S51_178V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-77bHLH family protein