PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 180aa MW: 20289.7 Da PI: 8.1045

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_3440V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sF+ + L H++ H Pp3c10_3440V3.2.p 9 FKCKFCGRSFRKHQALGGHMNAH 31 89******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.29E-7	6	35	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-5	8	33	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.759	9	36	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.2E-7	9	33	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
PQQQQDEPFK CKFCGRSFRK HQALGGHMNA HQEARDREKL EKLHDRLCRP RINGAPLKPL 60 YPEVNDNHYG PANEMPPYQM PAQISIGYPP DPPMRASHNR EGPMFPTYAN AYPTAVPYGV 120 PYQAATPLLD NSMRNPPALS PQGPRHPLEP VRSQHRASAS SPFEAESDFQ FGRFFSQED*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386618.1	1e-130	zinc finger protein JAGGED-like
TrEMBL	A9S6D3	1e-129	A9S6D3_PHYPA; Predicted protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	6e-09	zinc-finger protein 10

Link Out ? help Back to Top
Phytozome	Pp3c10_3440V3.2.p
Entrez Gene	5925070

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]