PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c10_22250V3.1.p

Common Name

PHYPADRAFT_71426

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Protein Properties

Length: 698aa MW: 79125.3 Da PI: 7.8043

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_22250V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39	1.4e-12	51	132	9	99
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 d ++ +++++p f++++ ++ + ++le+ +g +W v + + + + GW+eF ++n L gD++ F+l++ ++f +v+vf+ Pp3c10_22250V3.1.p 51 DGGQDCWMTVPEAFIRRYlPNV--DRQRMILENADGWKWPVMY--SVDG----FYYGWREFSNDNSLILGDMLFFSLVEIKRF--TVHVFS 131 67889***********7444..4457***********..6665....4569*****************9977888..999998 PP S CS B3 99 k 99 k Pp3c10_22250V3.1.p 132 K 132 7 PP
2	B3	38.2	2.6e-12	547	631	4	95
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v+ +s v ++ + +pkkf + ++ ++++k+ ++ d +W+v ++ ++ ++y+ ++GW++F+ ++ L+e D+vvF+++ +s++ +v Pp3c10_22250V3.1.p 547 VMRQSFVYRNFVMGMPKKFGQCYM--PAGNKETRICD---TEWKVWFCSWNAACGYLSGRGWRNFALDHCLEEDDTVVFEVIAESKT--MV 630 566778888999999**96664..44666777777...8899999999****************************9976555..33 PP E CS B3 95 k 95 + Pp3c10_22250V3.1.p 631 T 631 3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-14	38	133	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-16	39	133	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.5E-8	41	133	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.448	43	133	IPR003340	B3 DNA binding domain
CDD	cd10017	1.05E-18	51	131	No hit	No description
Pfam	PF02362	1.1E-10	51	132	IPR003340	B3 DNA binding domain
SMART	SM01019	2.2E-6	544	636	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.43E-16	544	631	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.446	544	636	IPR003340	B3 DNA binding domain
CDD	cd10017	2.78E-13	544	638	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.2E-12	545	632	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.7E-10	546	635	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
VGLSVNSLED SIGIACQPCV RTCMRVHGNY RSRTPLLHPC FYISVDEHSV DGGQDCWMTV 60 PEAFIRRYLP NVDRQRMILE NADGWKWPVM YSVDGFYYGW REFSNDNSLI LGDMLFFSLV 120 EIKRFTVHVF SKSSGCEKSA GIVKAPSNKV LRPRRGAVTE QQIHSMPALE GLSRFRENES 180 EERLEEPRNL SFGSCYEQRE GRVGVPPEEL RDTVGVHLRR PHHSTDDNHV VLQNQLRETQ 240 ISKGTSLDTH ERSKSMPAGN IHPPPSWTGM QSPKRRQTQT RALARAYVEK AKLRKTNLTD 300 LPVHGIVSEG SQNPLCKESI ITKSPRAQPL QSSDYIEERS CFDRDGGAIY GSDEGRSLSL 360 LQRGAYCRDR HNNVSEEEEE DTDVSLQNLS HTATGKTIIA DEIQNYPGSN DVDLNGFFAE 420 DIPTLTDHLN QEKQNRLENH LQNAPTRKRG RPRKYPIGEA QQPRTPLNVN SHAQRDKVQP 480 LAKRKRGRPF KHQILPQDFT SLNGPSRQMR DIFISRRQPV TQAEKDDALT AAHSFASGIE 540 ATNIVIVMRQ SFVYRNFVMG MPKKFGQCYM PAGNKETRIC DTEWKVWFCS WNAACGYLSG 600 RGWRNFALDH CLEEDDTVVF EVIAESKTMV TLMAHIFRVV AIPDGVTGWQ SHICPPDCFV 660 ETHSGLLIQP IPRMKLTTQQ ERDLKLEGSA MTDSLRS*

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

VGLSVNSLED SIGIACQPCV RTCMRVHGNY RSRTPLLHPC FYISVDEHSV DGGQDCWMTV  60
PEAFIRRYLP NVDRQRMILE NADGWKWPVM YSVDGFYYGW REFSNDNSLI LGDMLFFSLV  120
EIKRFTVHVF SKSSGCEKSA GIVKAPSNKV LRPRRGAVTE QQIHSMPALE GLSRFRENES  180
EERLEEPRNL SFGSCYEQRE GRVGVPPEEL RDTVGVHLRR PHHSTDDNHV VLQNQLRETQ  240
ISKGTSLDTH ERSKSMPAGN IHPPPSWTGM QSPKRRQTQT RALARAYVEK AKLRKTNLTD  300
LPVHGIVSEG SQNPLCKESI ITKSPRAQPL QSSDYIEERS CFDRDGGAIY GSDEGRSLSL  360
LQRGAYCRDR HNNVSEEEEE DTDVSLQNLS HTATGKTIIA DEIQNYPGSN DVDLNGFFAE  420
DIPTLTDHLN QEKQNRLENH LQNAPTRKRG RPRKYPIGEA QQPRTPLNVN SHAQRDKVQP  480
LAKRKRGRPF KHQILPQDFT SLNGPSRQMR DIFISRRQPV TQAEKDDALT AAHSFASGIE  540
ATNIVIVMRQ SFVYRNFVMG MPKKFGQCYM PAGNKETRIC DTEWKVWFCS WNAACGYLSG  600
RGWRNFALDH CLEEDDTVVF EVIAESKTMV TLMAHIFRVV AIPDGVTGWQ SHICPPDCFV  660
ETHSGLLIQP IPRMKLTTQQ ERDLKLEGSA MTDSLRS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386094.1	0.0	uncharacterized protein LOC112287389
TrEMBL	A0A2K1K033	0.0	A0A2K1K033_PHYPA; Uncharacterized protein (Fragment)
STRING	PP1S32_259V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-10	B3 family protein

Link Out ? help Back to Top
Phytozome	Pp3c10_22250V3.1.p
Entrez Gene	5921653

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]