PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_22250V3.1.p | ||||||||
Common Name | PHYPADRAFT_71426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 698aa MW: 79125.3 Da PI: 7.8043 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.4e-12 | 51 | 132 | 9 | 99 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 d ++ +++++p f++++ ++ + ++le+ +g +W v + + + + GW+eF ++n L gD++ F+l++ ++f +v+vf+ Pp3c10_22250V3.1.p 51 DGGQDCWMTVPEAFIRRYlPNV--DRQRMILENADGWKWPVMY--SVDG----FYYGWREFSNDNSLILGDMLFFSLVEIKRF--TVHVFS 131 67889*************7444..4457***************..6665....4569*******************9977888..999998 PP S CS B3 99 k 99 k Pp3c10_22250V3.1.p 132 K 132 7 PP | |||||||
2 | B3 | 38.2 | 2.6e-12 | 547 | 631 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v+ +s v ++ + +pkkf + ++ ++++k+ ++ d +W+v ++ ++ ++y+ ++GW++F+ ++ L+e D+vvF+++ +s++ +v Pp3c10_22250V3.1.p 547 VMRQSFVYRNFVMGMPKKFGQCYM--PAGNKETRICD---TEWKVWFCSWNAACGYLSGRGWRNFALDHCLEEDDTVVFEVIAESKT--MV 630 566778888999999****96664..44666777777...8899999999******************************9976555..33 PP E CS B3 95 k 95 + Pp3c10_22250V3.1.p 631 T 631 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-14 | 38 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-16 | 39 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-8 | 41 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.448 | 43 | 133 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-18 | 51 | 131 | No hit | No description |
Pfam | PF02362 | 1.1E-10 | 51 | 132 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-6 | 544 | 636 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.43E-16 | 544 | 631 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.446 | 544 | 636 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.78E-13 | 544 | 638 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.2E-12 | 545 | 632 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-10 | 546 | 635 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
VGLSVNSLED SIGIACQPCV RTCMRVHGNY RSRTPLLHPC FYISVDEHSV DGGQDCWMTV 60 PEAFIRRYLP NVDRQRMILE NADGWKWPVM YSVDGFYYGW REFSNDNSLI LGDMLFFSLV 120 EIKRFTVHVF SKSSGCEKSA GIVKAPSNKV LRPRRGAVTE QQIHSMPALE GLSRFRENES 180 EERLEEPRNL SFGSCYEQRE GRVGVPPEEL RDTVGVHLRR PHHSTDDNHV VLQNQLRETQ 240 ISKGTSLDTH ERSKSMPAGN IHPPPSWTGM QSPKRRQTQT RALARAYVEK AKLRKTNLTD 300 LPVHGIVSEG SQNPLCKESI ITKSPRAQPL QSSDYIEERS CFDRDGGAIY GSDEGRSLSL 360 LQRGAYCRDR HNNVSEEEEE DTDVSLQNLS HTATGKTIIA DEIQNYPGSN DVDLNGFFAE 420 DIPTLTDHLN QEKQNRLENH LQNAPTRKRG RPRKYPIGEA QQPRTPLNVN SHAQRDKVQP 480 LAKRKRGRPF KHQILPQDFT SLNGPSRQMR DIFISRRQPV TQAEKDDALT AAHSFASGIE 540 ATNIVIVMRQ SFVYRNFVMG MPKKFGQCYM PAGNKETRIC DTEWKVWFCS WNAACGYLSG 600 RGWRNFALDH CLEEDDTVVF EVIAESKTMV TLMAHIFRVV AIPDGVTGWQ SHICPPDCFV 660 ETHSGLLIQP IPRMKLTTQQ ERDLKLEGSA MTDSLRS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386094.1 | 0.0 | uncharacterized protein LOC112287389 | ||||
TrEMBL | A0A2K1K033 | 0.0 | A0A2K1K033_PHYPA; Uncharacterized protein (Fragment) | ||||
STRING | PP1S32_259V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_22250V3.1.p |
Entrez Gene | 5921653 |
Publications ? help Back to Top | |||
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