PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

TCP

Protein Properties

Length: 515aa MW: 52677.7 Da PI: 8.7463

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_20400V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.3e-39	79	223	2	127
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+q++++i+++tgt++++a ++ ++s +ss+s ++g Pp3c10_20400V3.2.p 79 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLKQSEQSIIAATGTGTIPAIASsIQGSIRSSSSMTTAGrag 169 789*************************************************************999995554233333333322222556 PP TCP 89 ................kaaksaakskksqksaasalnlakesrakarararertr 127 + + ++++ ++ + + +++e r + ra e +r Pp3c10_20400V3.2.p 170 lhgslglagpgggppaE-GMQGRMHQEQAQRGRNDWGPSAEDRVMEVTRAMEASR 223 78888899999998743.3333344444444445778888888777777766444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-34	83	199	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.389	85	139	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MTAMGGQGVG GGGGKVDSTA LAMAGLGQEY GGSEGQSSGS VGGIGCMSMP GGSGDLQQQP 60 QETQQQQQLA PAAPAKKPPP KRTSTKDRHT KVDGRGRRIR MPATCAARIF QLTRELGHKS 120 DGETIEWLLK QSEQSIIAAT GTGTIPAIAS SIQGSIRSSS SMTTAGRAGL HGSLGLAGPG 180 GGPPAEGMQG RMHQEQAQRG RNDWGPSAED RVMEVTRAME ASRRMNLGRG DPGISHDVMS 240 GFQHQDLVGS PSEAVEGMES PDSMLRKRPR DGPLQSRMKE DPDQQQSSRP VRATARQSLQ 300 LQGRQGQQHQ GGGSSGVMPA AMWAVAPVGT GVSSSGAMPG TIWMLPVSAS QGAPTSGVMP 360 GQSGQQIWTF PTTSAQYRMT AEAGTSIQLG PGGSGGSGQG NAPTSSSSGQ AMVPLTASVL 420 PSGVALMPRI NIQGGMGLDL QGGHMGHHMP LGSMLLQQGS QQMLGTGLGL SGDGHLGMLA 480 ALNAYSRNLT PDHQSMSGSG HQQGDSGDDH TSSQ*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MTAMGGQGVG GGGGKVDSTA LAMAGLGQEY GGSEGQSSGS VGGIGCMSMP GGSGDLQQQP  60
QETQQQQQLA PAAPAKKPPP KRTSTKDRHT KVDGRGRRIR MPATCAARIF QLTRELGHKS  120
DGETIEWLLK QSEQSIIAAT GTGTIPAIAS SIQGSIRSSS SMTTAGRAGL HGSLGLAGPG  180
GGPPAEGMQG RMHQEQAQRG RNDWGPSAED RVMEVTRAME ASRRMNLGRG DPGISHDVMS  240
GFQHQDLVGS PSEAVEGMES PDSMLRKRPR DGPLQSRMKE DPDQQQSSRP VRATARQSLQ  300
LQGRQGQQHQ GGGSSGVMPA AMWAVAPVGT GVSSSGAMPG TIWMLPVSAS QGAPTSGVMP  360
GQSGQQIWTF PTTSAQYRMT AEAGTSIQLG PGGSGGSGQG NAPTSSSSGQ AMVPLTASVL  420
PSGVALMPRI NIQGGMGLDL QGGHMGHHMP LGSMLLQQGS QQMLGTGLGL SGDGHLGMLA  480
ALNAYSRNLT PDHQSMSGSG HQQGDSGDDH TSSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386490.1	0.0	transcription factor TCP22-like
Refseq	XP_024386491.1	0.0	transcription factor TCP22-like
Refseq	XP_024386492.1	0.0	transcription factor TCP22-like
TrEMBL	A0A2K1JZT0	0.0	A0A2K1JZT0_PHYPA; Uncharacterized protein
STRING	PP1S67_183V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	5e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Pp3c10_20400V3.2.p
Entrez Gene	5927572

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]