PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_20000V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 605aa MW: 65807.7 Da PI: 6.1014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 237 | 286 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+taeeAa a++ + k++g Pp3c10_20000V3.2.p 237 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEEAAMAYDISATKFRG 286 7********.**********94....45*********************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.922 | 237 | 294 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 237 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-31 | 237 | 295 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.30E-33 | 237 | 295 | No hit | No description |
SMART | SM00380 | 2.4E-36 | 237 | 300 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 237 | 295 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-11 | 238 | 249 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 260 | 276 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MICLLSRSSG LDKLEGPRDP PDYIPPCNSP ARRCNLDTSQ IVDVATAPIP PQSTLTGAHP 60 DLFGVYSHNP QPLTSPWSRF LSSDEEFLGA AIGQKRFRSY DEFSYSSTGV GAEASTAYST 120 QRAKILHPLD TASVEVSKSR EVTCAPLDEV VKKAIERSPA GHTGSPSYTP EFSSNSGKHS 180 DVSIHLSPSQ SEDAQIRRSG LEQVQVGYSG DNSGQGGEIG GTVASEAPAA PPVKKRRYRG 240 VRQRPWGKWA AEIRDPKKAA RVWLGTFDTA EEAAMAYDIS ATKFRGLRAK LNFPDGKMPT 300 TSVPDTACSS TAVRTSVCAQ TTPTTTSVSF SPSPPLSMTS VDSLDQPQGH SSQRWTPQAA 360 SSAETRQYSS QFSWKSQTSA SSKASSTIHD PMMQQSVAPL LMTQTPYEPL DSYSQQSLQT 420 VYNSSAGNLL QQDSSSQSKH LQPLSMWSSQ ASASLPQILP SQPWQPNIPQ LNPVLDFNSS 480 QGRSSLKNYE PEFYHPAVPP QYQYSQPNFI QHGGQLQIVS DPSYQQQEVK PLSNLNDPQS 540 TLSGISTSSS SFPPSLSSSL QEFSYDQIFE EQESLMWIPR EVASPRHFSG SLFPFPDEQL 600 PPPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-23 | 234 | 294 | 2 | 63 | ATERF1 |
3gcc_A | 4e-23 | 234 | 294 | 2 | 63 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385934.1 | 0.0 | uncharacterized protein LOC112287288 | ||||
TrEMBL | A0A2K1JZR1 | 0.0 | A0A2K1JZR1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S67_144V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 4e-31 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_20000V3.2.p |