PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_19630V3.9.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 878aa    MW: 95827.7 Da    PI: 6.4172
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_19630V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49.1e-171573357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c10_19630V3.9.p 15 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 73
                        5678******************************9999*******************97 PP
2START154.49.6e-492024073203
                         HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
               START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                         aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W e+++++e+l ++ +g  g++
  Pp3c10_19630V3.9.p 202 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAG-KVTEVLKDRPAWLEDCRRMEVLGALPTGnrGTI 291
                         78999****************************************************.8888888888*********************** PP

                         EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
               START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         +l +++++a ++l+p Rd+ ++Ry+  l++g +vi+++S++  q+ p+    +s+vR+e++pSg+li+p+++g++ +++v+h d + ++++
  Pp3c10_19630V3.9.p 292 ELLYTQMYASTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQNGPSmppVQSFVRGEMFPSGYLIRPCDGGGCIIHVVDHYDNGPWSVP 382
                         ********************************************999988899************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 179 wllrslvksglaegaktwvatlqrq 203
                         ++lr+l++s ++ +++ + a+l+++
  Pp3c10_19630V3.9.p 383 EVLRPLYESPAVLAQRSTIAALRHL 407
                         *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4671074IPR001356Homeobox domain
SuperFamilySSF466895.13E-161177IPR009057Homeodomain-like
SMARTSM003897.2E-141278IPR001356Homeobox domain
CDDcd000861.79E-151575No hitNo description
PfamPF000462.7E-141673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-171773IPR009057Homeodomain-like
CDDcd146860.0010367103No hitNo description
PROSITE profilePS5084821.835191391IPR002913START domain
CDDcd088751.04E-76195411No hitNo description
SMARTSM002341.9E-37200410IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-20201405IPR023393START-like domain
PfamPF018523.9E-46202407IPR002913START domain
SuperFamilySSF559611.76E-35202411No hitNo description
PfamPF086702.4E-44733875IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MTESWKEQTM DSSGKYVRYT NEQVEALERV YHECPKPSSI RRHQLIKESP ILANIEPKQI  60
KVWFQNRRCR EKQRKEATRL VSVNAKLTAL NKLLMEENER LAKHASQLTL ENHSLRQQLP  120
SLPLTNGTHR LSSQNLLKKE RAVNGGDESS TQGGICVKLH GQAGVASTDT SCDSAVTGGL  180
PHHLTPRHSP RYTSPAGLLA TAEETLTEFL AKATGTAVDW IQLPGMKPGP DAIGIIAISH  240
GCVGIAARAC GLVALDAGKV TEVLKDRPAW LEDCRRMEVL GALPTGNRGT IELLYTQMYA  300
STTLAPARDY CTLRYTTILE DGNLVICERS LTGGQNGPSM PPVQSFVRGE MFPSGYLIRP  360
CDGGGCIIHV VDHYDNGPWS VPEVLRPLYE SPAVLAQRST IAALRHLRRL AAEESGEGNP  420
RNGQHPAVLR TLGQRLAKGF KNAVNGFADD GWVSTVSDGL DDVSVILNAT SQSMEGQIAS  480
DKLLYSLGGG ILCAKASMLL QNVPPSILIK FLREHRSEWA DYDMDANLAT SFRSNGNGYA  540
PQGGGVSHVQ LPLPLPNSGE HGEILEVVKL EDHSSVQHMV ISRDSFLLQL CSGIDENAVG  600
ASAQLIFAPV DVALTEDIPL LPSGFCISPV DANVLDEFDL DHTLDLASTL EGGSDLRLNG  660
DSKSNGTSSH MRSVLTIAFQ FAYEVHSHEA CAVMARQYLR TVVSSVQRVA MALAPSRGSA  720
PPRQMSANPD ALSLARHVLR SYRLHLGLDL TRSENGGDET LFKAFWHHTD AILCCAWKGK  780
PEFVFANRSG LEMFETTTSS LQELDWDKTL NESDCKLSYA TFTQVLQQGY CSLPAGVRMS  840
SSGRTATYER ALVWKVVDDN ETVECIAFLF INWSFVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99280.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572030.0DQ657203.1 Physcomitrella patens class III HD-Zip protein HB13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386782.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024386783.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024386784.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4280.0Q0Q428_PHYPA; Class III HD-Zip protein HB13
STRINGPP1S67_107V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]